Results 41 - 48 of 48 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 11852 | 3' | -53.5 | NC_003266.2 | + | 23245 | 0.7 | 0.49326 |
|
Target: 5'- ----cGCCGgGCCGcGAGAGCCCGucGCCu -3' miRNA: 3'- gcagaUGGCgCGGC-UUUUUGGGU--CGG- -5' |
|||||||
| 11852 | 3' | -53.5 | NC_003266.2 | + | 9306 | 0.69 | 0.536734 |
|
Target: 5'- cCGUCUGCCcguGCGCCGccggcGACgCAGgCCc -3' miRNA: 3'- -GCAGAUGG---CGCGGCuuu--UUGgGUC-GG- -5' |
|||||||
| 11852 | 3' | -53.5 | NC_003266.2 | + | 4517 | 0.69 | 0.547817 |
|
Target: 5'- aCGUCUuugcccaaGCCGcCGCCcAcgGGCCCAuaGCCa -3' miRNA: 3'- -GCAGA--------UGGC-GCGGcUuuUUGGGU--CGG- -5' |
|||||||
| 11852 | 3' | -53.5 | NC_003266.2 | + | 27982 | 0.68 | 0.555619 |
|
Target: 5'- cCGUCacuacaGCCGCGCUGcccAGACCCAaaaucgaaaguaccGCCa -3' miRNA: 3'- -GCAGa-----UGGCGCGGCuu-UUUGGGU--------------CGG- -5' |
|||||||
| 11852 | 3' | -53.5 | NC_003266.2 | + | 9717 | 0.68 | 0.569065 |
|
Target: 5'- cCGUCUgcgcauccagcaaGCCGgGCCcAAAGACCUGGUg -3' miRNA: 3'- -GCAGA-------------UGGCgCGGcUUUUUGGGUCGg -5' |
|||||||
| 11852 | 3' | -53.5 | NC_003266.2 | + | 19762 | 0.68 | 0.591644 |
|
Target: 5'- gCGUCcACCagcgaggGCGCCacc--ACCCGGCCg -3' miRNA: 3'- -GCAGaUGG-------CGCGGcuuuuUGGGUCGG- -5' |
|||||||
| 11852 | 3' | -53.5 | NC_003266.2 | + | 16724 | 0.68 | 0.615508 |
|
Target: 5'- gGUCUGCa-CGCC--AAGGCCCggGGCCa -3' miRNA: 3'- gCAGAUGgcGCGGcuUUUUGGG--UCGG- -5' |
|||||||
| 11852 | 3' | -53.5 | NC_003266.2 | + | 6761 | 1.13 | 0.000513 |
|
Target: 5'- uCGUCUACCGCGCCGAAAAACCCAGCCg -3' miRNA: 3'- -GCAGAUGGCGCGGCUUUUUGGGUCGG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home