Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11852 | 3' | -53.5 | NC_003266.2 | + | 14711 | 0.7 | 0.472133 |
Target: 5'- gCGUC-GCCGCGUC----AACCgCAGCCg -3' miRNA: 3'- -GCAGaUGGCGCGGcuuuUUGG-GUCGG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 24524 | 0.69 | 0.514811 |
Target: 5'- aCGUgCUGCacaccacccUGCGCgGGGAGGCCC-GCCg -3' miRNA: 3'- -GCA-GAUG---------GCGCGgCUUUUUGGGuCGG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 23678 | 0.69 | 0.52573 |
Target: 5'- ---gUGCCccucaGCGUgGAGGAGCUCAGCCg -3' miRNA: 3'- gcagAUGG-----CGCGgCUUUUUGGGUCGG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 14999 | 0.69 | 0.53563 |
Target: 5'- aGUCUacuggucGCUGC-CCGAcaugaugcAAGACCCGGUCa -3' miRNA: 3'- gCAGA-------UGGCGcGGCU--------UUUUGGGUCGG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 19762 | 0.68 | 0.591644 |
Target: 5'- gCGUCcACCagcgaggGCGCCacc--ACCCGGCCg -3' miRNA: 3'- -GCAGaUGG-------CGCGGcuuuuUGGGUCGG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 16724 | 0.68 | 0.615508 |
Target: 5'- gGUCUGCa-CGCC--AAGGCCCggGGCCa -3' miRNA: 3'- gCAGAUGgcGCGGcuUUUUGGG--UCGG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 15892 | 0.67 | 0.626902 |
Target: 5'- aGUcCUGCCgGCGCUGGc--GCCUgaAGCCg -3' miRNA: 3'- gCA-GAUGG-CGCGGCUuuuUGGG--UCGG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 17358 | 0.67 | 0.6383 |
Target: 5'- uGUCUcagUgGCGCUGAGAGGCCUGcaccGCCa -3' miRNA: 3'- gCAGAu--GgCGCGGCUUUUUGGGU----CGG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 15862 | 0.67 | 0.6383 |
Target: 5'- gCGUCUgGCCGCcCUGAGcauGGCCCuGCg -3' miRNA: 3'- -GCAGA-UGGCGcGGCUUu--UUGGGuCGg -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 11259 | 0.67 | 0.647416 |
Target: 5'- gGUCUGCuCGUacGCCGugaccagguuGGCCgCGGCCa -3' miRNA: 3'- gCAGAUG-GCG--CGGCuuu-------UUGG-GUCGG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 5370 | 0.67 | 0.649693 |
Target: 5'- aG-CU-CCGCGCC-AAAGGCCacgCGGCCg -3' miRNA: 3'- gCaGAuGGCGCGGcUUUUUGG---GUCGG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 9717 | 0.68 | 0.569065 |
Target: 5'- cCGUCUgcgcauccagcaaGCCGgGCCcAAAGACCUGGUg -3' miRNA: 3'- -GCAGA-------------UGGCgCGGcUUUUUGGGUCGg -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 27982 | 0.68 | 0.555619 |
Target: 5'- cCGUCacuacaGCCGCGCUGcccAGACCCAaaaucgaaaguaccGCCa -3' miRNA: 3'- -GCAGa-----UGGCGCGGCuu-UUUGGGU--------------CGG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 4517 | 0.69 | 0.547817 |
Target: 5'- aCGUCUuugcccaaGCCGcCGCCcAcgGGCCCAuaGCCa -3' miRNA: 3'- -GCAGA--------UGGC-GCGGcUuuUUGGGU--CGG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 9306 | 0.69 | 0.536734 |
Target: 5'- cCGUCUGCCcguGCGCCGccggcGACgCAGgCCc -3' miRNA: 3'- -GCAGAUGG---CGCGGCuuu--UUGgGUC-GG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 23245 | 0.7 | 0.49326 |
Target: 5'- ----cGCCGgGCCGcGAGAGCCCGucGCCu -3' miRNA: 3'- gcagaUGGCgCGGC-UUUUUGGGU--CGG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 35325 | 0.71 | 0.431317 |
Target: 5'- -uUCUACaaugguCGCGCCG-GAGACCCuguAGCCu -3' miRNA: 3'- gcAGAUG------GCGCGGCuUUUUGGG---UCGG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 11149 | 0.72 | 0.365154 |
Target: 5'- uGUCcagGCCGCGCCGcAGcuCCC-GCCc -3' miRNA: 3'- gCAGa--UGGCGCGGCuUUuuGGGuCGG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 7371 | 0.76 | 0.222904 |
Target: 5'- gGUCaucaacaACCGgGCCGAGGugcCCCAGCCu -3' miRNA: 3'- gCAGa------UGGCgCGGCUUUuu-GGGUCGG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 10341 | 0.66 | 0.728291 |
Target: 5'- aCGaCUGCgCGCGCCucacGGGccAGACCguGCCc -3' miRNA: 3'- -GCaGAUG-GCGCGG----CUU--UUUGGguCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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