Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11852 | 3' | -53.5 | NC_003266.2 | + | 16994 | 0.68 | 0.558972 |
Target: 5'- aGUgUACCGCcgcgGCCGcgcgccucuGACCCuGCCg -3' miRNA: 3'- gCAgAUGGCG----CGGCuuu------UUGGGuCGG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 9717 | 0.68 | 0.569065 |
Target: 5'- cCGUCUgcgcauccagcaaGCCGgGCCcAAAGACCUGGUg -3' miRNA: 3'- -GCAGA-------------UGGCgCGGcUUUUUGGGUCGg -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 19762 | 0.68 | 0.591644 |
Target: 5'- gCGUCcACCagcgaggGCGCCacc--ACCCGGCCg -3' miRNA: 3'- -GCAGaUGG-------CGCGGcuuuuUGGGUCGG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 16724 | 0.68 | 0.615508 |
Target: 5'- gGUCUGCa-CGCC--AAGGCCCggGGCCa -3' miRNA: 3'- gCAGAUGgcGCGGcuUUUUGGG--UCGG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 15892 | 0.67 | 0.626902 |
Target: 5'- aGUcCUGCCgGCGCUGGc--GCCUgaAGCCg -3' miRNA: 3'- gCA-GAUGG-CGCGGCUuuuUGGG--UCGG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 15862 | 0.67 | 0.6383 |
Target: 5'- gCGUCUgGCCGCcCUGAGcauGGCCCuGCg -3' miRNA: 3'- -GCAGA-UGGCGcGGCUUu--UUGGGuCGg -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 17358 | 0.67 | 0.6383 |
Target: 5'- uGUCUcagUgGCGCUGAGAGGCCUGcaccGCCa -3' miRNA: 3'- gCAGAu--GgCGCGGCUUUUUGGGU----CGG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 3745 | 0.67 | 0.638301 |
Target: 5'- aG-CUGCUGCuGuuGAu-GGCCCAGCUc -3' miRNA: 3'- gCaGAUGGCG-CggCUuuUUGGGUCGG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 11259 | 0.67 | 0.647416 |
Target: 5'- gGUCUGCuCGUacGCCGugaccagguuGGCCgCGGCCa -3' miRNA: 3'- gCAGAUG-GCG--CGGCuuu-------UUGG-GUCGG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 5370 | 0.67 | 0.649693 |
Target: 5'- aG-CU-CCGCGCC-AAAGGCCacgCGGCCg -3' miRNA: 3'- gCaGAuGGCGCGGcUUUUUGG---GUCGG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 8527 | 0.67 | 0.661068 |
Target: 5'- --cCUGCCcgcgcgcgGCGCCGAcguGCCCcuGCCa -3' miRNA: 3'- gcaGAUGG--------CGCGGCUuuuUGGGu-CGG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 15450 | 0.67 | 0.669015 |
Target: 5'- gGUCUGCgCGCGCCcagcaagauguacgGAGGcGCUC-GCCa -3' miRNA: 3'- gCAGAUG-GCGCGG--------------CUUUuUGGGuCGG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 26408 | 0.67 | 0.672415 |
Target: 5'- aGUCcuggGCgGCGCCGGc-GGCCaGGCCc -3' miRNA: 3'- gCAGa---UGgCGCGGCUuuUUGGgUCGG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 9289 | 0.67 | 0.676943 |
Target: 5'- gGUCUcGCCGCGCCGGcgucgcaugguCUCGGUg -3' miRNA: 3'- gCAGA-UGGCGCGGCUuuuu-------GGGUCGg -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 6649 | 0.66 | 0.682593 |
Target: 5'- aGUCaUACaacuCGUGCgagggggCGAGGAGCCCGGCUc -3' miRNA: 3'- gCAG-AUG----GCGCG-------GCUUUUUGGGUCGG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 17138 | 0.66 | 0.683721 |
Target: 5'- ----aACCGCGCCGuAGAAGgCUGGCg -3' miRNA: 3'- gcagaUGGCGCGGC-UUUUUgGGUCGg -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 24040 | 0.66 | 0.683721 |
Target: 5'- gCGUUUGCgGC-CCGAGucucgugcuGCCCAGaCCc -3' miRNA: 3'- -GCAGAUGgCGcGGCUUuu-------UGGGUC-GG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 2150 | 0.66 | 0.683721 |
Target: 5'- aG-CUACUccucCGCCGGAGggUCCAGgCCg -3' miRNA: 3'- gCaGAUGGc---GCGGCUUUuuGGGUC-GG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 13298 | 0.66 | 0.694974 |
Target: 5'- gGUgCUGCCGCaGCgGu---GCCCgaGGCCg -3' miRNA: 3'- gCA-GAUGGCG-CGgCuuuuUGGG--UCGG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 28215 | 0.66 | 0.706161 |
Target: 5'- uGUUUACCGUG-CGAagGAAGCCguCAGCa -3' miRNA: 3'- gCAGAUGGCGCgGCU--UUUUGG--GUCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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