Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11852 | 3' | -53.5 | NC_003266.2 | + | 6761 | 1.13 | 0.000513 |
Target: 5'- uCGUCUACCGCGCCGAAAAACCCAGCCg -3' miRNA: 3'- -GCAGAUGGCGCGGCUUUUUGGGUCGG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 7371 | 0.76 | 0.222904 |
Target: 5'- gGUCaucaacaACCGgGCCGAGGugcCCCAGCCu -3' miRNA: 3'- gCAGa------UGGCgCGGCUUUuu-GGGUCGG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 21336 | 0.75 | 0.229047 |
Target: 5'- --aCUGCUGCGCCGcAGcGCCCuGGCCa -3' miRNA: 3'- gcaGAUGGCGCGGCuUUuUGGG-UCGG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 11505 | 0.75 | 0.248338 |
Target: 5'- gCGggCUGCCGCuGuCCGAGAAGCUggCGGCCa -3' miRNA: 3'- -GCa-GAUGGCG-C-GGCUUUUUGG--GUCGG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 15676 | 0.74 | 0.276125 |
Target: 5'- uGUCcgACgCGCGCCGGuacGCCCGcGCCa -3' miRNA: 3'- gCAGa-UG-GCGCGGCUuuuUGGGU-CGG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 14894 | 0.74 | 0.283449 |
Target: 5'- cCGcCUACCGCaGCUGGu--ACCUGGCCu -3' miRNA: 3'- -GCaGAUGGCG-CGGCUuuuUGGGUCGG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 11149 | 0.72 | 0.365154 |
Target: 5'- uGUCcagGCCGCGCCGcAGcuCCC-GCCc -3' miRNA: 3'- gCAGa--UGGCGCGGCuUUuuGGGuCGG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 20991 | 0.72 | 0.368742 |
Target: 5'- cCGUCUACCuGCGCacccccuuCUCAGCCg -3' miRNA: 3'- -GCAGAUGG-CGCGgcuuuuu-GGGUCGG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 7461 | 0.72 | 0.374168 |
Target: 5'- gGUCgcugagcCCGUGCUGcucGAGGGCCCAGUCg -3' miRNA: 3'- gCAGau-----GGCGCGGC---UUUUUGGGUCGG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 12790 | 0.72 | 0.374168 |
Target: 5'- aCGUgaGCCGCGCCcuuggccaGGAcGACCCGGgCa -3' miRNA: 3'- -GCAgaUGGCGCGG--------CUUuUUGGGUCgG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 35325 | 0.71 | 0.431317 |
Target: 5'- -uUCUACaaugguCGCGCCG-GAGACCCuguAGCCu -3' miRNA: 3'- gcAGAUG------GCGCGGCuUUUUGGG---UCGG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 14711 | 0.7 | 0.472133 |
Target: 5'- gCGUC-GCCGCGUC----AACCgCAGCCg -3' miRNA: 3'- -GCAGaUGGCGCGGcuuuUUGG-GUCGG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 23245 | 0.7 | 0.49326 |
Target: 5'- ----cGCCGgGCCGcGAGAGCCCGucGCCu -3' miRNA: 3'- gcagaUGGCgCGGC-UUUUUGGGU--CGG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 24524 | 0.69 | 0.514811 |
Target: 5'- aCGUgCUGCacaccacccUGCGCgGGGAGGCCC-GCCg -3' miRNA: 3'- -GCA-GAUG---------GCGCGgCUUUUUGGGuCGG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 23678 | 0.69 | 0.52573 |
Target: 5'- ---gUGCCccucaGCGUgGAGGAGCUCAGCCg -3' miRNA: 3'- gcagAUGG-----CGCGgCUUUUUGGGUCGG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 14999 | 0.69 | 0.53563 |
Target: 5'- aGUCUacuggucGCUGC-CCGAcaugaugcAAGACCCGGUCa -3' miRNA: 3'- gCAGA-------UGGCGcGGCU--------UUUUGGGUCGG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 9306 | 0.69 | 0.536734 |
Target: 5'- cCGUCUGCCcguGCGCCGccggcGACgCAGgCCc -3' miRNA: 3'- -GCAGAUGG---CGCGGCuuu--UUGgGUC-GG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 4517 | 0.69 | 0.547817 |
Target: 5'- aCGUCUuugcccaaGCCGcCGCCcAcgGGCCCAuaGCCa -3' miRNA: 3'- -GCAGA--------UGGC-GCGGcUuuUUGGGU--CGG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 23800 | 0.69 | 0.547818 |
Target: 5'- gGUCUucGCgGUGCCc-GAGGCCCuGGCCa -3' miRNA: 3'- gCAGA--UGgCGCGGcuUUUUGGG-UCGG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 27982 | 0.68 | 0.555619 |
Target: 5'- cCGUCacuacaGCCGCGCUGcccAGACCCAaaaucgaaaguaccGCCa -3' miRNA: 3'- -GCAGa-----UGGCGCGGCuu-UUUGGGU--------------CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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