miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11852 3' -53.5 NC_003266.2 + 22115 0.66 0.706162
Target:  5'- gGUCUGCCG-GCCcaugguGGGCaCgCAGCCg -3'
miRNA:   3'- gCAGAUGGCgCGGcuu---UUUG-G-GUCGG- -5'
11852 3' -53.5 NC_003266.2 + 16994 0.68 0.558972
Target:  5'- aGUgUACCGCcgcgGCCGcgcgccucuGACCCuGCCg -3'
miRNA:   3'- gCAgAUGGCG----CGGCuuu------UUGGGuCGG- -5'
11852 3' -53.5 NC_003266.2 + 3745 0.67 0.638301
Target:  5'- aG-CUGCUGCuGuuGAu-GGCCCAGCUc -3'
miRNA:   3'- gCaGAUGGCG-CggCUuuUUGGGUCGG- -5'
11852 3' -53.5 NC_003266.2 + 15450 0.67 0.669015
Target:  5'- gGUCUGCgCGCGCCcagcaagauguacgGAGGcGCUC-GCCa -3'
miRNA:   3'- gCAGAUG-GCGCGG--------------CUUUuUGGGuCGG- -5'
11852 3' -53.5 NC_003266.2 + 9289 0.67 0.676943
Target:  5'- gGUCUcGCCGCGCCGGcgucgcaugguCUCGGUg -3'
miRNA:   3'- gCAGA-UGGCGCGGCUuuuu-------GGGUCGg -5'
11852 3' -53.5 NC_003266.2 + 6649 0.66 0.682593
Target:  5'- aGUCaUACaacuCGUGCgagggggCGAGGAGCCCGGCUc -3'
miRNA:   3'- gCAG-AUG----GCGCG-------GCUUUUUGGGUCGG- -5'
11852 3' -53.5 NC_003266.2 + 17138 0.66 0.683721
Target:  5'- ----aACCGCGCCGuAGAAGgCUGGCg -3'
miRNA:   3'- gcagaUGGCGCGGC-UUUUUgGGUCGg -5'
11852 3' -53.5 NC_003266.2 + 13298 0.66 0.694974
Target:  5'- gGUgCUGCCGCaGCgGu---GCCCgaGGCCg -3'
miRNA:   3'- gCA-GAUGGCG-CGgCuuuuUGGG--UCGG- -5'
11852 3' -53.5 NC_003266.2 + 5811 0.66 0.706162
Target:  5'- aGUgUAggccaCGUGaCCGggGGuCCCGGCCg -3'
miRNA:   3'- gCAgAUg----GCGC-GGCuuUUuGGGUCGG- -5'
11852 3' -53.5 NC_003266.2 + 23800 0.69 0.547818
Target:  5'- gGUCUucGCgGUGCCc-GAGGCCCuGGCCa -3'
miRNA:   3'- gCAGA--UGgCGCGGcuUUUUGGG-UCGG- -5'
11852 3' -53.5 NC_003266.2 + 14999 0.69 0.53563
Target:  5'- aGUCUacuggucGCUGC-CCGAcaugaugcAAGACCCGGUCa -3'
miRNA:   3'- gCAGA-------UGGCGcGGCU--------UUUUGGGUCGG- -5'
11852 3' -53.5 NC_003266.2 + 23678 0.69 0.52573
Target:  5'- ---gUGCCccucaGCGUgGAGGAGCUCAGCCg -3'
miRNA:   3'- gcagAUGG-----CGCGgCUUUUUGGGUCGG- -5'
11852 3' -53.5 NC_003266.2 + 11505 0.75 0.248338
Target:  5'- gCGggCUGCCGCuGuCCGAGAAGCUggCGGCCa -3'
miRNA:   3'- -GCa-GAUGGCG-C-GGCUUUUUGG--GUCGG- -5'
11852 3' -53.5 NC_003266.2 + 15676 0.74 0.276125
Target:  5'- uGUCcgACgCGCGCCGGuacGCCCGcGCCa -3'
miRNA:   3'- gCAGa-UG-GCGCGGCUuuuUGGGU-CGG- -5'
11852 3' -53.5 NC_003266.2 + 14894 0.74 0.283449
Target:  5'- cCGcCUACCGCaGCUGGu--ACCUGGCCu -3'
miRNA:   3'- -GCaGAUGGCG-CGGCUuuuUGGGUCGG- -5'
11852 3' -53.5 NC_003266.2 + 20991 0.72 0.368742
Target:  5'- cCGUCUACCuGCGCacccccuuCUCAGCCg -3'
miRNA:   3'- -GCAGAUGG-CGCGgcuuuuu-GGGUCGG- -5'
11852 3' -53.5 NC_003266.2 + 7461 0.72 0.374168
Target:  5'- gGUCgcugagcCCGUGCUGcucGAGGGCCCAGUCg -3'
miRNA:   3'- gCAGau-----GGCGCGGC---UUUUUGGGUCGG- -5'
11852 3' -53.5 NC_003266.2 + 12790 0.72 0.374168
Target:  5'- aCGUgaGCCGCGCCcuuggccaGGAcGACCCGGgCa -3'
miRNA:   3'- -GCAgaUGGCGCGG--------CUUuUUGGGUCgG- -5'
11852 3' -53.5 NC_003266.2 + 14711 0.7 0.472133
Target:  5'- gCGUC-GCCGCGUC----AACCgCAGCCg -3'
miRNA:   3'- -GCAGaUGGCGCGGcuuuUUGG-GUCGG- -5'
11852 3' -53.5 NC_003266.2 + 24524 0.69 0.514811
Target:  5'- aCGUgCUGCacaccacccUGCGCgGGGAGGCCC-GCCg -3'
miRNA:   3'- -GCA-GAUG---------GCGCGgCUUUUUGGGuCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.