Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11852 | 3' | -53.5 | NC_003266.2 | + | 2150 | 0.66 | 0.683721 |
Target: 5'- aG-CUACUccucCGCCGGAGggUCCAGgCCg -3' miRNA: 3'- gCaGAUGGc---GCGGCUUUuuGGGUC-GG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 3745 | 0.67 | 0.638301 |
Target: 5'- aG-CUGCUGCuGuuGAu-GGCCCAGCUc -3' miRNA: 3'- gCaGAUGGCG-CggCUuuUUGGGUCGG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 4517 | 0.69 | 0.547817 |
Target: 5'- aCGUCUuugcccaaGCCGcCGCCcAcgGGCCCAuaGCCa -3' miRNA: 3'- -GCAGA--------UGGC-GCGGcUuuUUGGGU--CGG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 5370 | 0.67 | 0.649693 |
Target: 5'- aG-CU-CCGCGCC-AAAGGCCacgCGGCCg -3' miRNA: 3'- gCaGAuGGCGCGGcUUUUUGG---GUCGG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 5811 | 0.66 | 0.706162 |
Target: 5'- aGUgUAggccaCGUGaCCGggGGuCCCGGCCg -3' miRNA: 3'- gCAgAUg----GCGC-GGCuuUUuGGGUCGG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 6649 | 0.66 | 0.682593 |
Target: 5'- aGUCaUACaacuCGUGCgagggggCGAGGAGCCCGGCUc -3' miRNA: 3'- gCAG-AUG----GCGCG-------GCUUUUUGGGUCGG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 6761 | 1.13 | 0.000513 |
Target: 5'- uCGUCUACCGCGCCGAAAAACCCAGCCg -3' miRNA: 3'- -GCAGAUGGCGCGGCUUUUUGGGUCGG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 7371 | 0.76 | 0.222904 |
Target: 5'- gGUCaucaacaACCGgGCCGAGGugcCCCAGCCu -3' miRNA: 3'- gCAGa------UGGCgCGGCUUUuu-GGGUCGG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 7461 | 0.72 | 0.374168 |
Target: 5'- gGUCgcugagcCCGUGCUGcucGAGGGCCCAGUCg -3' miRNA: 3'- gCAGau-----GGCGCGGC---UUUUUGGGUCGG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 8527 | 0.67 | 0.661068 |
Target: 5'- --cCUGCCcgcgcgcgGCGCCGAcguGCCCcuGCCa -3' miRNA: 3'- gcaGAUGG--------CGCGGCUuuuUGGGu-CGG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 9289 | 0.67 | 0.676943 |
Target: 5'- gGUCUcGCCGCGCCGGcgucgcaugguCUCGGUg -3' miRNA: 3'- gCAGA-UGGCGCGGCUuuuu-------GGGUCGg -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 9306 | 0.69 | 0.536734 |
Target: 5'- cCGUCUGCCcguGCGCCGccggcGACgCAGgCCc -3' miRNA: 3'- -GCAGAUGG---CGCGGCuuu--UUGgGUC-GG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 9717 | 0.68 | 0.569065 |
Target: 5'- cCGUCUgcgcauccagcaaGCCGgGCCcAAAGACCUGGUg -3' miRNA: 3'- -GCAGA-------------UGGCgCGGcUUUUUGGGUCGg -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 10053 | 0.66 | 0.717271 |
Target: 5'- gCGcCUAUCGCGCCucaaguaccacGAGcucgcgcGGCCCGGUCa -3' miRNA: 3'- -GCaGAUGGCGCGG-----------CUUu------UUGGGUCGG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 10341 | 0.66 | 0.728291 |
Target: 5'- aCGaCUGCgCGCGCCucacGGGccAGACCguGCCc -3' miRNA: 3'- -GCaGAUG-GCGCGG----CUU--UUUGGguCGG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 11149 | 0.72 | 0.365154 |
Target: 5'- uGUCcagGCCGCGCCGcAGcuCCC-GCCc -3' miRNA: 3'- gCAGa--UGGCGCGGCuUUuuGGGuCGG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 11259 | 0.67 | 0.647416 |
Target: 5'- gGUCUGCuCGUacGCCGugaccagguuGGCCgCGGCCa -3' miRNA: 3'- gCAGAUG-GCG--CGGCuuu-------UUGG-GUCGG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 11505 | 0.75 | 0.248338 |
Target: 5'- gCGggCUGCCGCuGuCCGAGAAGCUggCGGCCa -3' miRNA: 3'- -GCa-GAUGGCG-C-GGCUUUUUGG--GUCGG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 12790 | 0.72 | 0.374168 |
Target: 5'- aCGUgaGCCGCGCCcuuggccaGGAcGACCCGGgCa -3' miRNA: 3'- -GCAgaUGGCGCGG--------CUUuUUGGGUCgG- -5' |
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11852 | 3' | -53.5 | NC_003266.2 | + | 12977 | 0.66 | 0.717272 |
Target: 5'- gCGcUCgacaugACCGCGCgCaacauGGAGCCCAGCa -3' miRNA: 3'- -GC-AGa-----UGGCGCG-Gcu---UUUUGGGUCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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