miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11852 3' -53.5 NC_003266.2 + 35325 0.71 0.431317
Target:  5'- -uUCUACaaugguCGCGCCG-GAGACCCuguAGCCu -3'
miRNA:   3'- gcAGAUG------GCGCGGCuUUUUGGG---UCGG- -5'
11852 3' -53.5 NC_003266.2 + 28215 0.66 0.706161
Target:  5'- uGUUUACCGUG-CGAagGAAGCCguCAGCa -3'
miRNA:   3'- gCAGAUGGCGCgGCU--UUUUGG--GUCGg -5'
11852 3' -53.5 NC_003266.2 + 27982 0.68 0.555619
Target:  5'- cCGUCacuacaGCCGCGCUGcccAGACCCAaaaucgaaaguaccGCCa -3'
miRNA:   3'- -GCAGa-----UGGCGCGGCuu-UUUGGGU--------------CGG- -5'
11852 3' -53.5 NC_003266.2 + 26408 0.67 0.672415
Target:  5'- aGUCcuggGCgGCGCCGGc-GGCCaGGCCc -3'
miRNA:   3'- gCAGa---UGgCGCGGCUuuUUGGgUCGG- -5'
11852 3' -53.5 NC_003266.2 + 24524 0.69 0.514811
Target:  5'- aCGUgCUGCacaccacccUGCGCgGGGAGGCCC-GCCg -3'
miRNA:   3'- -GCA-GAUG---------GCGCGgCUUUUUGGGuCGG- -5'
11852 3' -53.5 NC_003266.2 + 24040 0.66 0.683721
Target:  5'- gCGUUUGCgGC-CCGAGucucgugcuGCCCAGaCCc -3'
miRNA:   3'- -GCAGAUGgCGcGGCUUuu-------UGGGUC-GG- -5'
11852 3' -53.5 NC_003266.2 + 23800 0.69 0.547818
Target:  5'- gGUCUucGCgGUGCCc-GAGGCCCuGGCCa -3'
miRNA:   3'- gCAGA--UGgCGCGGcuUUUUGGG-UCGG- -5'
11852 3' -53.5 NC_003266.2 + 23678 0.69 0.52573
Target:  5'- ---gUGCCccucaGCGUgGAGGAGCUCAGCCg -3'
miRNA:   3'- gcagAUGG-----CGCGgCUUUUUGGGUCGG- -5'
11852 3' -53.5 NC_003266.2 + 23245 0.7 0.49326
Target:  5'- ----cGCCGgGCCGcGAGAGCCCGucGCCu -3'
miRNA:   3'- gcagaUGGCgCGGC-UUUUUGGGU--CGG- -5'
11852 3' -53.5 NC_003266.2 + 22321 0.66 0.706161
Target:  5'- gGUCUucuucACCGagggaGCC--AAGGCCCAGCa -3'
miRNA:   3'- gCAGA-----UGGCg----CGGcuUUUUGGGUCGg -5'
11852 3' -53.5 NC_003266.2 + 22115 0.66 0.706162
Target:  5'- gGUCUGCCG-GCCcaugguGGGCaCgCAGCCg -3'
miRNA:   3'- gCAGAUGGCgCGGcuu---UUUG-G-GUCGG- -5'
11852 3' -53.5 NC_003266.2 + 21336 0.75 0.229047
Target:  5'- --aCUGCUGCGCCGcAGcGCCCuGGCCa -3'
miRNA:   3'- gcaGAUGGCGCGGCuUUuUGGG-UCGG- -5'
11852 3' -53.5 NC_003266.2 + 20991 0.72 0.368742
Target:  5'- cCGUCUACCuGCGCacccccuuCUCAGCCg -3'
miRNA:   3'- -GCAGAUGG-CGCGgcuuuuu-GGGUCGG- -5'
11852 3' -53.5 NC_003266.2 + 19762 0.68 0.591644
Target:  5'- gCGUCcACCagcgaggGCGCCacc--ACCCGGCCg -3'
miRNA:   3'- -GCAGaUGG-------CGCGGcuuuuUGGGUCGG- -5'
11852 3' -53.5 NC_003266.2 + 17358 0.67 0.6383
Target:  5'- uGUCUcagUgGCGCUGAGAGGCCUGcaccGCCa -3'
miRNA:   3'- gCAGAu--GgCGCGGCUUUUUGGGU----CGG- -5'
11852 3' -53.5 NC_003266.2 + 17138 0.66 0.683721
Target:  5'- ----aACCGCGCCGuAGAAGgCUGGCg -3'
miRNA:   3'- gcagaUGGCGCGGC-UUUUUgGGUCGg -5'
11852 3' -53.5 NC_003266.2 + 16994 0.68 0.558972
Target:  5'- aGUgUACCGCcgcgGCCGcgcgccucuGACCCuGCCg -3'
miRNA:   3'- gCAgAUGGCG----CGGCuuu------UUGGGuCGG- -5'
11852 3' -53.5 NC_003266.2 + 16947 0.66 0.717272
Target:  5'- cCGUCgucGCCGCacaGCUGAAcu-CCCGcuGCCg -3'
miRNA:   3'- -GCAGa--UGGCG---CGGCUUuuuGGGU--CGG- -5'
11852 3' -53.5 NC_003266.2 + 16724 0.68 0.615508
Target:  5'- gGUCUGCa-CGCC--AAGGCCCggGGCCa -3'
miRNA:   3'- gCAGAUGgcGCGGcuUUUUGGG--UCGG- -5'
11852 3' -53.5 NC_003266.2 + 16074 0.66 0.717272
Target:  5'- gGUC-AUCGCGCCuGAGAucuacGGCCCcGCg -3'
miRNA:   3'- gCAGaUGGCGCGG-CUUU-----UUGGGuCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.