miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11852 3' -53.5 NC_003266.2 + 3745 0.67 0.638301
Target:  5'- aG-CUGCUGCuGuuGAu-GGCCCAGCUc -3'
miRNA:   3'- gCaGAUGGCG-CggCUuuUUGGGUCGG- -5'
11852 3' -53.5 NC_003266.2 + 15862 0.67 0.6383
Target:  5'- gCGUCUgGCCGCcCUGAGcauGGCCCuGCg -3'
miRNA:   3'- -GCAGA-UGGCGcGGCUUu--UUGGGuCGg -5'
11852 3' -53.5 NC_003266.2 + 17358 0.67 0.6383
Target:  5'- uGUCUcagUgGCGCUGAGAGGCCUGcaccGCCa -3'
miRNA:   3'- gCAGAu--GgCGCGGCUUUUUGGGU----CGG- -5'
11852 3' -53.5 NC_003266.2 + 15892 0.67 0.626902
Target:  5'- aGUcCUGCCgGCGCUGGc--GCCUgaAGCCg -3'
miRNA:   3'- gCA-GAUGG-CGCGGCUuuuUGGG--UCGG- -5'
11852 3' -53.5 NC_003266.2 + 16724 0.68 0.615508
Target:  5'- gGUCUGCa-CGCC--AAGGCCCggGGCCa -3'
miRNA:   3'- gCAGAUGgcGCGGcuUUUUGGG--UCGG- -5'
11852 3' -53.5 NC_003266.2 + 19762 0.68 0.591644
Target:  5'- gCGUCcACCagcgaggGCGCCacc--ACCCGGCCg -3'
miRNA:   3'- -GCAGaUGG-------CGCGGcuuuuUGGGUCGG- -5'
11852 3' -53.5 NC_003266.2 + 9717 0.68 0.569065
Target:  5'- cCGUCUgcgcauccagcaaGCCGgGCCcAAAGACCUGGUg -3'
miRNA:   3'- -GCAGA-------------UGGCgCGGcUUUUUGGGUCGg -5'
11852 3' -53.5 NC_003266.2 + 16994 0.68 0.558972
Target:  5'- aGUgUACCGCcgcgGCCGcgcgccucuGACCCuGCCg -3'
miRNA:   3'- gCAgAUGGCG----CGGCuuu------UUGGGuCGG- -5'
11852 3' -53.5 NC_003266.2 + 27982 0.68 0.555619
Target:  5'- cCGUCacuacaGCCGCGCUGcccAGACCCAaaaucgaaaguaccGCCa -3'
miRNA:   3'- -GCAGa-----UGGCGCGGCuu-UUUGGGU--------------CGG- -5'
11852 3' -53.5 NC_003266.2 + 23800 0.69 0.547818
Target:  5'- gGUCUucGCgGUGCCc-GAGGCCCuGGCCa -3'
miRNA:   3'- gCAGA--UGgCGCGGcuUUUUGGG-UCGG- -5'
11852 3' -53.5 NC_003266.2 + 4517 0.69 0.547817
Target:  5'- aCGUCUuugcccaaGCCGcCGCCcAcgGGCCCAuaGCCa -3'
miRNA:   3'- -GCAGA--------UGGC-GCGGcUuuUUGGGU--CGG- -5'
11852 3' -53.5 NC_003266.2 + 9306 0.69 0.536734
Target:  5'- cCGUCUGCCcguGCGCCGccggcGACgCAGgCCc -3'
miRNA:   3'- -GCAGAUGG---CGCGGCuuu--UUGgGUC-GG- -5'
11852 3' -53.5 NC_003266.2 + 14999 0.69 0.53563
Target:  5'- aGUCUacuggucGCUGC-CCGAcaugaugcAAGACCCGGUCa -3'
miRNA:   3'- gCAGA-------UGGCGcGGCU--------UUUUGGGUCGG- -5'
11852 3' -53.5 NC_003266.2 + 23678 0.69 0.52573
Target:  5'- ---gUGCCccucaGCGUgGAGGAGCUCAGCCg -3'
miRNA:   3'- gcagAUGG-----CGCGgCUUUUUGGGUCGG- -5'
11852 3' -53.5 NC_003266.2 + 24524 0.69 0.514811
Target:  5'- aCGUgCUGCacaccacccUGCGCgGGGAGGCCC-GCCg -3'
miRNA:   3'- -GCA-GAUG---------GCGCGgCUUUUUGGGuCGG- -5'
11852 3' -53.5 NC_003266.2 + 23245 0.7 0.49326
Target:  5'- ----cGCCGgGCCGcGAGAGCCCGucGCCu -3'
miRNA:   3'- gcagaUGGCgCGGC-UUUUUGGGU--CGG- -5'
11852 3' -53.5 NC_003266.2 + 14711 0.7 0.472133
Target:  5'- gCGUC-GCCGCGUC----AACCgCAGCCg -3'
miRNA:   3'- -GCAGaUGGCGCGGcuuuUUGG-GUCGG- -5'
11852 3' -53.5 NC_003266.2 + 35325 0.71 0.431317
Target:  5'- -uUCUACaaugguCGCGCCG-GAGACCCuguAGCCu -3'
miRNA:   3'- gcAGAUG------GCGCGGCuUUUUGGG---UCGG- -5'
11852 3' -53.5 NC_003266.2 + 7461 0.72 0.374168
Target:  5'- gGUCgcugagcCCGUGCUGcucGAGGGCCCAGUCg -3'
miRNA:   3'- gCAGau-----GGCGCGGC---UUUUUGGGUCGG- -5'
11852 3' -53.5 NC_003266.2 + 12790 0.72 0.374168
Target:  5'- aCGUgaGCCGCGCCcuuggccaGGAcGACCCGGgCa -3'
miRNA:   3'- -GCAgaUGGCGCGG--------CUUuUUGGGUCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.