miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11853 5' -60.8 NC_003266.2 + 24530 0.87 0.007998
Target:  5'- uGCACACCaCCCUGCGCGGGGagGCCCg -3'
miRNA:   3'- -CGUGUGGaGGGACGCGUUCCggCGGG- -5'
11853 5' -60.8 NC_003266.2 + 9135 0.66 0.32825
Target:  5'- cGCGCACCUC---GCGCucgAAGGCU-CCCg -3'
miRNA:   3'- -CGUGUGGAGggaCGCG---UUCCGGcGGG- -5'
11853 5' -60.8 NC_003266.2 + 9753 0.66 0.320359
Target:  5'- cGgGCACCUCCUccucgccCGCGcGGCCGUgCa -3'
miRNA:   3'- -CgUGUGGAGGGac-----GCGUuCCGGCGgG- -5'
11853 5' -60.8 NC_003266.2 + 16475 0.66 0.31261
Target:  5'- -aGC-CCgugaCCCUGCaGCAGGuGCUGCCg -3'
miRNA:   3'- cgUGuGGa---GGGACG-CGUUC-CGGCGGg -5'
11853 5' -60.8 NC_003266.2 + 6293 0.67 0.258366
Target:  5'- gGC-CACCUCgCC-GCGCAggggcucguugguccAgcagaggcGGCCGCCCu -3'
miRNA:   3'- -CGuGUGGAG-GGaCGCGU---------------U--------CCGGCGGG- -5'
11853 5' -60.8 NC_003266.2 + 15683 0.68 0.234864
Target:  5'- cGCGCGCCgguacgCCC-GCGcCAAGaGCCggcggcggcgcaucGCCCg -3'
miRNA:   3'- -CGUGUGGa-----GGGaCGC-GUUC-CGG--------------CGGG- -5'
11853 5' -60.8 NC_003266.2 + 15519 0.68 0.230625
Target:  5'- cGCGgGCaCUUCC-GCGCucccuGGGgCGCCCu -3'
miRNA:   3'- -CGUgUG-GAGGGaCGCGu----UCCgGCGGG- -5'
11853 5' -60.8 NC_003266.2 + 20959 0.69 0.191701
Target:  5'- aGUGCACCagCCCcaccgcgGCGUcauuGAGGCCGUCUa -3'
miRNA:   3'- -CGUGUGGa-GGGa------CGCG----UUCCGGCGGG- -5'
11853 5' -60.8 NC_003266.2 + 13552 0.69 0.186636
Target:  5'- gGC-CACCagCCgGgGCAGuGCCGCCCg -3'
miRNA:   3'- -CGuGUGGagGGaCgCGUUcCGGCGGG- -5'
11853 5' -60.8 NC_003266.2 + 20668 0.7 0.181689
Target:  5'- -gAUACCUcgcgCCCacuaUGCGcCAGGGCCaGCCCu -3'
miRNA:   3'- cgUGUGGA----GGG----ACGC-GUUCCGG-CGGG- -5'
11853 5' -60.8 NC_003266.2 + 9325 0.71 0.154384
Target:  5'- gGCGCGCCcgUCCU-CGCGGGGUCGCa- -3'
miRNA:   3'- -CGUGUGGa-GGGAcGCGUUCCGGCGgg -5'
11853 5' -60.8 NC_003266.2 + 17010 0.73 0.110667
Target:  5'- cGCGCGCCUcugaCCCUGcCGCG-GGCgCGCUa -3'
miRNA:   3'- -CGUGUGGA----GGGAC-GCGUuCCG-GCGGg -5'
11853 5' -60.8 NC_003266.2 + 20167 0.73 0.104613
Target:  5'- uGCcCAUCUccaucCCCUcGCGCAacuGGGCCGCCUu -3'
miRNA:   3'- -CGuGUGGA-----GGGA-CGCGU---UCCGGCGGG- -5'
11853 5' -60.8 NC_003266.2 + 15761 0.76 0.059078
Target:  5'- gGCGCgaGCCUUgCUGCGCAGGGCCagGCgCa -3'
miRNA:   3'- -CGUG--UGGAGgGACGCGUUCCGG--CGgG- -5'
11853 5' -60.8 NC_003266.2 + 15877 0.72 0.123771
Target:  5'- -gGCGCCUgaagCC-GCGCGucuGGCCGCCCu -3'
miRNA:   3'- cgUGUGGAg---GGaCGCGUu--CCGGCGGG- -5'
11853 5' -60.8 NC_003266.2 + 21222 0.73 0.096113
Target:  5'- cGCAgGCCaCCUUGUGCGGGGCCaugaauCCCg -3'
miRNA:   3'- -CGUgUGGaGGGACGCGUUCCGGc-----GGG- -5'
11853 5' -60.8 NC_003266.2 + 9452 0.74 0.083383
Target:  5'- aGCGCACuCUCCCUGCccaaCGGGGaCCcCCCg -3'
miRNA:   3'- -CGUGUG-GAGGGACGc---GUUCC-GGcGGG- -5'
11853 5' -60.8 NC_003266.2 + 24594 0.75 0.066301
Target:  5'- gGCGgGCCUCCCcGCGCAGGGUgGUg- -3'
miRNA:   3'- -CGUgUGGAGGGaCGCGUUCCGgCGgg -5'
11853 5' -60.8 NC_003266.2 + 15829 0.8 0.029349
Target:  5'- cGUGCGCCUggCCCUGCGCAgcaAGGCuCGCgCCg -3'
miRNA:   3'- -CGUGUGGA--GGGACGCGU---UCCG-GCG-GG- -5'
11853 5' -60.8 NC_003266.2 + 7465 0.66 0.336284
Target:  5'- -aACugC-CCCa-CGUcaAGGGCCGCCCg -3'
miRNA:   3'- cgUGugGaGGGacGCG--UUCCGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.