miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11853 5' -60.8 NC_003266.2 + 6558 0.71 0.142172
Target:  5'- gGCACGCCccuuagUCCCUacgaGCGCGcgcuGGCCGUgCg -3'
miRNA:   3'- -CGUGUGG------AGGGA----CGCGUu---CCGGCGgG- -5'
11853 5' -60.8 NC_003266.2 + 16860 0.66 0.31261
Target:  5'- cCGCGCCguaCUUGCGCcgggguuuucgGGGcGCCGCCg -3'
miRNA:   3'- cGUGUGGag-GGACGCG-----------UUC-CGGCGGg -5'
11853 5' -60.8 NC_003266.2 + 7465 0.66 0.336284
Target:  5'- -aACugC-CCCa-CGUcaAGGGCCGCCCg -3'
miRNA:   3'- cgUGugGaGGGacGCG--UUCCGGCGGG- -5'
11853 5' -60.8 NC_003266.2 + 7150 1.13 0.00007
Target:  5'- cGCACACCUCCCUGCGCAAGGCCGCCCa -3'
miRNA:   3'- -CGUGUGGAGGGACGCGUUCCGGCGGG- -5'
11853 5' -60.8 NC_003266.2 + 15829 0.8 0.029349
Target:  5'- cGUGCGCCUggCCCUGCGCAgcaAGGCuCGCgCCg -3'
miRNA:   3'- -CGUGUGGA--GGGACGCGU---UCCG-GCG-GG- -5'
11853 5' -60.8 NC_003266.2 + 24594 0.75 0.066301
Target:  5'- gGCGgGCCUCCCcGCGCAGGGUgGUg- -3'
miRNA:   3'- -CGUgUGGAGGGaCGCGUUCCGgCGgg -5'
11853 5' -60.8 NC_003266.2 + 9452 0.74 0.083383
Target:  5'- aGCGCACuCUCCCUGCccaaCGGGGaCCcCCCg -3'
miRNA:   3'- -CGUGUG-GAGGGACGc---GUUCC-GGcGGG- -5'
11853 5' -60.8 NC_003266.2 + 21222 0.73 0.096113
Target:  5'- cGCAgGCCaCCUUGUGCGGGGCCaugaauCCCg -3'
miRNA:   3'- -CGUgUGGaGGGACGCGUUCCGGc-----GGG- -5'
11853 5' -60.8 NC_003266.2 + 15877 0.72 0.123771
Target:  5'- -gGCGCCUgaagCC-GCGCGucuGGCCGCCCu -3'
miRNA:   3'- cgUGUGGAg---GGaCGCGUu--CCGGCGGG- -5'
11853 5' -60.8 NC_003266.2 + 3280 0.67 0.290222
Target:  5'- gGCAUGCUUCCCUcCGCAcucgcAGGCuCGacaCCu -3'
miRNA:   3'- -CGUGUGGAGGGAcGCGU-----UCCG-GCg--GG- -5'
11853 5' -60.8 NC_003266.2 + 9192 0.67 0.262354
Target:  5'- ---aGCCUUCgaGCGCGAGGUgCGCgCCa -3'
miRNA:   3'- cgugUGGAGGgaCGCGUUCCG-GCG-GG- -5'
11853 5' -60.8 NC_003266.2 + 6410 0.67 0.258366
Target:  5'- uGCugGaCC-CCCUgccccccuucugcucGCGCAAgggcGGCCGCCUc -3'
miRNA:   3'- -CGugU-GGaGGGA---------------CGCGUU----CCGGCGGG- -5'
11853 5' -60.8 NC_003266.2 + 31059 0.7 0.158661
Target:  5'- aCGCugCUCCgaGC-CGcGGCCGUCCa -3'
miRNA:   3'- cGUGugGAGGgaCGcGUuCCGGCGGG- -5'
11853 5' -60.8 NC_003266.2 + 8167 0.67 0.273923
Target:  5'- cGCGCcgaggucuggaccuGCCUCCC-GCGCG-GGCuCGUCa -3'
miRNA:   3'- -CGUG--------------UGGAGGGaCGCGUuCCG-GCGGg -5'
11853 5' -60.8 NC_003266.2 + 11039 0.7 0.181689
Target:  5'- cGCGaGCgUCCCUuuucaucugcacGCGCGGGuGCCGCuCCg -3'
miRNA:   3'- -CGUgUGgAGGGA------------CGCGUUC-CGGCG-GG- -5'
11853 5' -60.8 NC_003266.2 + 23284 0.68 0.245432
Target:  5'- aGCGCACC-CCCgaucGCGgAAGGggcucugccagccacCCGCCg -3'
miRNA:   3'- -CGUGUGGaGGGa---CGCgUUCC---------------GGCGGg -5'
11853 5' -60.8 NC_003266.2 + 11162 0.67 0.290222
Target:  5'- aGCAC-CCUCUuuCUGUcC-AGGCCGCgCCg -3'
miRNA:   3'- -CGUGuGGAGG--GACGcGuUCCGGCG-GG- -5'
11853 5' -60.8 NC_003266.2 + 4265 0.66 0.323498
Target:  5'- uGCAUcCCUCCCaGCucaacagguuuGUAaacaccuacaccaaaGGGCUGCCCg -3'
miRNA:   3'- -CGUGuGGAGGGaCG-----------CGU---------------UCCGGCGGG- -5'
11853 5' -60.8 NC_003266.2 + 30237 0.68 0.218867
Target:  5'- uUAgACCUCCCUccaccugaaGCgGCuccGGCUGCCCg -3'
miRNA:   3'- cGUgUGGAGGGA---------CG-CGuu-CCGGCGGG- -5'
11853 5' -60.8 NC_003266.2 + 11104 0.68 0.236701
Target:  5'- cGCGCAUCUCCUcGgGCuccucGCCGCUCc -3'
miRNA:   3'- -CGUGUGGAGGGaCgCGuuc--CGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.