Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11854 | 5' | -63.3 | NC_003266.2 | + | 11960 | 0.67 | 0.192428 |
Target: 5'- aGCCAccuCCUGaucCCCaauGCGgGCGGCGCUg -3' miRNA: 3'- -UGGUcuuGGAC---GGG---CGCgCGCCGCGG- -5' |
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11854 | 5' | -63.3 | NC_003266.2 | + | 12211 | 0.7 | 0.125199 |
Target: 5'- gGCCAGcACCUuCUCGUGCGUGGgGUUg -3' miRNA: 3'- -UGGUCuUGGAcGGGCGCGCGCCgCGG- -5' |
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11854 | 5' | -63.3 | NC_003266.2 | + | 12221 | 0.67 | 0.208126 |
Target: 5'- gGCCGGGcugguguacaacGCaCUGCUggaGCGCGUGGC-CCg -3' miRNA: 3'- -UGGUCU------------UG-GACGGg--CGCGCGCCGcGG- -5' |
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11854 | 5' | -63.3 | NC_003266.2 | + | 12609 | 0.67 | 0.215823 |
Target: 5'- gACCGcgcgacggugucGAGCCUGCUgacgccgaacuCGCGCcugcugcugcugcugGUGGCGCCc -3' miRNA: 3'- -UGGU------------CUUGGACGG-----------GCGCG---------------CGCCGCGG- -5' |
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11854 | 5' | -63.3 | NC_003266.2 | + | 13292 | 0.66 | 0.230765 |
Target: 5'- cGCaCGGGugCUG-CCGCa-GCGGUGCCc -3' miRNA: 3'- -UG-GUCUugGACgGGCGcgCGCCGCGG- -5' |
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11854 | 5' | -63.3 | NC_003266.2 | + | 15195 | 0.69 | 0.13223 |
Target: 5'- aACCAGAuCCUcGUCCGCcCGCccGCGCCc -3' miRNA: 3'- -UGGUCUuGGA-CGGGCGcGCGc-CGCGG- -5' |
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11854 | 5' | -63.3 | NC_003266.2 | + | 15402 | 0.67 | 0.213599 |
Target: 5'- cCCAGGGCCuUGUagaCGUaggggcagGUGCGGCGUCu -3' miRNA: 3'- uGGUCUUGG-ACGg--GCG--------CGCGCCGCGG- -5' |
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11854 | 5' | -63.3 | NC_003266.2 | + | 15687 | 0.7 | 0.125199 |
Target: 5'- cGCCGGuAC--GCCCGCGCcaagagccggcgGCGGCGCa -3' miRNA: 3'- -UGGUCuUGgaCGGGCGCG------------CGCCGCGg -5' |
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11854 | 5' | -63.3 | NC_003266.2 | + | 15735 | 0.68 | 0.173119 |
Target: 5'- cACCguAGcACCaccGCCaUGCGUGCGGCGCg -3' miRNA: 3'- -UGG--UCuUGGa--CGG-GCGCGCGCCGCGg -5' |
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11854 | 5' | -63.3 | NC_003266.2 | + | 15796 | 0.69 | 0.15514 |
Target: 5'- gACgCAGGGCCaUGCUcagggcggccagaCGCGCGgcuucaGGCGCCa -3' miRNA: 3'- -UG-GUCUUGG-ACGG-------------GCGCGCg-----CCGCGG- -5' |
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11854 | 5' | -63.3 | NC_003266.2 | + | 15907 | 0.73 | 0.075914 |
Target: 5'- gGCCGcgcgucuccGAGuCCUGCCgGCGC-UGGCGCCu -3' miRNA: 3'- -UGGU---------CUU-GGACGGgCGCGcGCCGCGG- -5' |
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11854 | 5' | -63.3 | NC_003266.2 | + | 16292 | 0.68 | 0.182548 |
Target: 5'- cACCGGAcgcACUUuccGCCCGCGCcacuGCacGCGCCu -3' miRNA: 3'- -UGGUCU---UGGA---CGGGCGCG----CGc-CGCGG- -5' |
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11854 | 5' | -63.3 | NC_003266.2 | + | 16341 | 0.66 | 0.224917 |
Target: 5'- uGCCGGAccGCUcGCCagGCGCgaaaaccaccGUGGUGCCg -3' miRNA: 3'- -UGGUCU--UGGaCGGg-CGCG----------CGCCGCGG- -5' |
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11854 | 5' | -63.3 | NC_003266.2 | + | 16491 | 0.77 | 0.032258 |
Target: 5'- -gCAGGugCUGCCga-GCGCGGCGCCg -3' miRNA: 3'- ugGUCUugGACGGgcgCGCGCCGCGG- -5' |
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11854 | 5' | -63.3 | NC_003266.2 | + | 16575 | 0.66 | 0.249079 |
Target: 5'- cGCCcucGcGCUUcaaGCCC-CGaCGCGGCGCCg -3' miRNA: 3'- -UGGu--CuUGGA---CGGGcGC-GCGCCGCGG- -5' |
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11854 | 5' | -63.3 | NC_003266.2 | + | 18005 | 0.75 | 0.04821 |
Target: 5'- cGCCGGuGGCCgugGCCCGCGCGCgaccgGGgGCUc -3' miRNA: 3'- -UGGUC-UUGGa--CGGGCGCGCG-----CCgCGG- -5' |
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11854 | 5' | -63.3 | NC_003266.2 | + | 18086 | 0.72 | 0.08735 |
Target: 5'- cGCCugAGGGCgaGCCCccggucGCGCGCGG-GCCa -3' miRNA: 3'- -UGG--UCUUGgaCGGG------CGCGCGCCgCGG- -5' |
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11854 | 5' | -63.3 | NC_003266.2 | + | 20956 | 0.66 | 0.242845 |
Target: 5'- uCCAGugcACCaGCCCcacCGCGGCGUCa -3' miRNA: 3'- uGGUCu--UGGaCGGGcgcGCGCCGCGG- -5' |
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11854 | 5' | -63.3 | NC_003266.2 | + | 21395 | 0.68 | 0.182548 |
Target: 5'- cCCAG-ACCgugcaggGUCCGCGUuCGGcCGCCu -3' miRNA: 3'- uGGUCuUGGa------CGGGCGCGcGCC-GCGG- -5' |
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11854 | 5' | -63.3 | NC_003266.2 | + | 21859 | 0.69 | 0.151834 |
Target: 5'- uACCAGuuccgcaacgugucCCUGCCCGCGgGCcaUGCCg -3' miRNA: 3'- -UGGUCuu------------GGACGGGCGCgCGccGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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