miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11854 5' -63.3 NC_003266.2 + 2929 0.72 0.08735
Target:  5'- uACCAGAugCUGaCCUGCGC-CGGUGg- -3'
miRNA:   3'- -UGGUCUugGAC-GGGCGCGcGCCGCgg -5'
11854 5' -63.3 NC_003266.2 + 3641 0.66 0.219196
Target:  5'- uGCC---GCCaGCgCCGUGCGCGGaaugGCCa -3'
miRNA:   3'- -UGGucuUGGaCG-GGCGCGCGCCg---CGG- -5'
11854 5' -63.3 NC_003266.2 + 3716 0.7 0.118516
Target:  5'- aGCCGGcGCCcaugGCcauuCCGCGCaCGGCGCUg -3'
miRNA:   3'- -UGGUCuUGGa---CG----GGCGCGcGCCGCGG- -5'
11854 5' -63.3 NC_003266.2 + 5164 0.74 0.057203
Target:  5'- gACCGGAcCCUGgCCGCGC-UGGaCGCCc -3'
miRNA:   3'- -UGGUCUuGGACgGGCGCGcGCC-GCGG- -5'
11854 5' -63.3 NC_003266.2 + 6363 0.66 0.224917
Target:  5'- uGCUGGAccaACgaGCCCcUGCGCGGCgaggugGCCa -3'
miRNA:   3'- -UGGUCU---UGgaCGGGcGCGCGCCG------CGG- -5'
11854 5' -63.3 NC_003266.2 + 6410 0.68 0.182548
Target:  5'- uGCUGGAcccCCUGCCCcccuucugcucGCGCaaggGCGGcCGCCu -3'
miRNA:   3'- -UGGUCUu--GGACGGG-----------CGCG----CGCC-GCGG- -5'
11854 5' -63.3 NC_003266.2 + 6462 0.66 0.24845
Target:  5'- uCCAGAgaaGCUUGCCauuCGCGCacggccaGCGcGCGCUc -3'
miRNA:   3'- uGGUCU---UGGACGG---GCGCG-------CGC-CGCGG- -5'
11854 5' -63.3 NC_003266.2 + 7191 0.66 0.219196
Target:  5'- cCCAGAGCUggaaGUCCGUGCGCuucuuguaGGCGg- -3'
miRNA:   3'- uGGUCUUGGa---CGGGCGCGCG--------CCGCgg -5'
11854 5' -63.3 NC_003266.2 + 7258 0.69 0.139624
Target:  5'- --gAGGAUCuUGCCCGCGCGgGGCa-- -3'
miRNA:   3'- uggUCUUGG-ACGGGCGCGCgCCGcgg -5'
11854 5' -63.3 NC_003266.2 + 8165 0.69 0.151426
Target:  5'- cGCCGaggucuGGACCUGCCuCcCGCGCGG-GCUc -3'
miRNA:   3'- -UGGU------CUUGGACGG-GcGCGCGCCgCGG- -5'
11854 5' -63.3 NC_003266.2 + 8479 0.67 0.208126
Target:  5'- uCCcGAGCCgccccuaccGCCCgGCGCGCGuccuCGCCg -3'
miRNA:   3'- uGGuCUUGGa--------CGGG-CGCGCGCc---GCGG- -5'
11854 5' -63.3 NC_003266.2 + 8535 1.1 0.000072
Target:  5'- uACCAGAACCUGCCCGCGCGCGGCGCCg -3'
miRNA:   3'- -UGGUCUUGGACGGGCGCGCGCCGCGG- -5'
11854 5' -63.3 NC_003266.2 + 9236 0.66 0.224917
Target:  5'- --gGGGGCCUGCgUCGcCG-GCGGCGCa -3'
miRNA:   3'- uggUCUUGGACG-GGC-GCgCGCCGCGg -5'
11854 5' -63.3 NC_003266.2 + 9308 0.68 0.173119
Target:  5'- gACCG---UCUGCCCGUGCGC--CGCCg -3'
miRNA:   3'- -UGGUcuuGGACGGGCGCGCGccGCGG- -5'
11854 5' -63.3 NC_003266.2 + 9423 0.68 0.177778
Target:  5'- cCCGGGccACCUGgagaUGCGCgGCGGCGUCu -3'
miRNA:   3'- uGGUCU--UGGACgg--GCGCG-CGCCGCGG- -5'
11854 5' -63.3 NC_003266.2 + 9788 0.69 0.13223
Target:  5'- cGCguGAGCCcaaaCCCGCGCuGCGGCuggacgagcGCCa -3'
miRNA:   3'- -UGguCUUGGac--GGGCGCG-CGCCG---------CGG- -5'
11854 5' -63.3 NC_003266.2 + 11158 0.69 0.13223
Target:  5'- gACgGGGAUCaGCCCuGCGCGCGcGCacgugGCCg -3'
miRNA:   3'- -UGgUCUUGGaCGGG-CGCGCGC-CG-----CGG- -5'
11854 5' -63.3 NC_003266.2 + 11241 0.76 0.039452
Target:  5'- gACCAGGuugGCCgcgGCCaCGUGCGCGcGCGCa -3'
miRNA:   3'- -UGGUCU---UGGa--CGG-GCGCGCGC-CGCGg -5'
11854 5' -63.3 NC_003266.2 + 11339 0.67 0.197542
Target:  5'- cCCAGGgucACCUcCUCGCGCGCGaucaggguGCGCa -3'
miRNA:   3'- uGGUCU---UGGAcGGGCGCGCGC--------CGCGg -5'
11854 5' -63.3 NC_003266.2 + 11768 0.69 0.143073
Target:  5'- cGCC---GCCUGCUgGCgcuuaccGCGCGGCGCa -3'
miRNA:   3'- -UGGucuUGGACGGgCG-------CGCGCCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.