miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11854 5' -63.3 NC_003266.2 + 13292 0.66 0.230765
Target:  5'- cGCaCGGGugCUG-CCGCa-GCGGUGCCc -3'
miRNA:   3'- -UG-GUCUugGACgGGCGcgCGCCGCGG- -5'
11854 5' -63.3 NC_003266.2 + 21395 0.68 0.182548
Target:  5'- cCCAG-ACCgugcaggGUCCGCGUuCGGcCGCCu -3'
miRNA:   3'- uGGUCuUGGa------CGGGCGCGcGCC-GCGG- -5'
11854 5' -63.3 NC_003266.2 + 11960 0.67 0.192428
Target:  5'- aGCCAccuCCUGaucCCCaauGCGgGCGGCGCUg -3'
miRNA:   3'- -UGGUcuuGGAC---GGG---CGCgCGCCGCGG- -5'
11854 5' -63.3 NC_003266.2 + 24854 0.67 0.208126
Target:  5'- uGCCGGccACCUGCuCCGCGCuGCccucggacuucGUGCCg -3'
miRNA:   3'- -UGGUCu-UGGACG-GGCGCG-CGc----------CGCGG- -5'
11854 5' -63.3 NC_003266.2 + 12221 0.67 0.208126
Target:  5'- gGCCGGGcugguguacaacGCaCUGCUggaGCGCGUGGC-CCg -3'
miRNA:   3'- -UGGUCU------------UG-GACGGg--CGCGCGCCGcGG- -5'
11854 5' -63.3 NC_003266.2 + 12609 0.67 0.215823
Target:  5'- gACCGcgcgacggugucGAGCCUGCUgacgccgaacuCGCGCcugcugcugcugcugGUGGCGCCc -3'
miRNA:   3'- -UGGU------------CUUGGACGG-----------GCGCG---------------CGCCGCGG- -5'
11854 5' -63.3 NC_003266.2 + 7191 0.66 0.219196
Target:  5'- cCCAGAGCUggaaGUCCGUGCGCuucuuguaGGCGg- -3'
miRNA:   3'- uGGUCUUGGa---CGGGCGCGCG--------CCGCgg -5'
11854 5' -63.3 NC_003266.2 + 3641 0.66 0.219196
Target:  5'- uGCC---GCCaGCgCCGUGCGCGGaaugGCCa -3'
miRNA:   3'- -UGGucuUGGaCG-GGCGCGCGCCg---CGG- -5'
11854 5' -63.3 NC_003266.2 + 9236 0.66 0.224917
Target:  5'- --gGGGGCCUGCgUCGcCG-GCGGCGCa -3'
miRNA:   3'- uggUCUUGGACG-GGC-GCgCGCCGCGg -5'
11854 5' -63.3 NC_003266.2 + 15735 0.68 0.173119
Target:  5'- cACCguAGcACCaccGCCaUGCGUGCGGCGCg -3'
miRNA:   3'- -UGG--UCuUGGa--CGG-GCGCGCGCCGCGg -5'
11854 5' -63.3 NC_003266.2 + 15796 0.69 0.15514
Target:  5'- gACgCAGGGCCaUGCUcagggcggccagaCGCGCGgcuucaGGCGCCa -3'
miRNA:   3'- -UG-GUCUUGG-ACGG-------------GCGCGCg-----CCGCGG- -5'
11854 5' -63.3 NC_003266.2 + 7258 0.69 0.139624
Target:  5'- --gAGGAUCuUGCCCGCGCGgGGCa-- -3'
miRNA:   3'- uggUCUUGG-ACGGGCGCGCgCCGcgg -5'
11854 5' -63.3 NC_003266.2 + 18005 0.75 0.04821
Target:  5'- cGCCGGuGGCCgugGCCCGCGCGCgaccgGGgGCUc -3'
miRNA:   3'- -UGGUC-UUGGa--CGGGCGCGCG-----CCgCGG- -5'
11854 5' -63.3 NC_003266.2 + 26603 0.74 0.064081
Target:  5'- cUCAGGuguCCaGCUgGCGgGCGGCGCCa -3'
miRNA:   3'- uGGUCUu--GGaCGGgCGCgCGCCGCGG- -5'
11854 5' -63.3 NC_003266.2 + 2929 0.72 0.08735
Target:  5'- uACCAGAugCUGaCCUGCGC-CGGUGg- -3'
miRNA:   3'- -UGGUCUugGAC-GGGCGCGcGCCGCgg -5'
11854 5' -63.3 NC_003266.2 + 26338 0.71 0.106136
Target:  5'- cCCAGAuggGCCUGgCCGC---CGGCGCCg -3'
miRNA:   3'- uGGUCU---UGGACgGGCGcgcGCCGCGG- -5'
11854 5' -63.3 NC_003266.2 + 15687 0.7 0.125199
Target:  5'- cGCCGGuAC--GCCCGCGCcaagagccggcgGCGGCGCa -3'
miRNA:   3'- -UGGUCuUGgaCGGGCGCG------------CGCCGCGg -5'
11854 5' -63.3 NC_003266.2 + 11158 0.69 0.13223
Target:  5'- gACgGGGAUCaGCCCuGCGCGCGcGCacgugGCCg -3'
miRNA:   3'- -UGgUCUUGGaCGGG-CGCGCGC-CG-----CGG- -5'
11854 5' -63.3 NC_003266.2 + 15195 0.69 0.13223
Target:  5'- aACCAGAuCCUcGUCCGCcCGCccGCGCCc -3'
miRNA:   3'- -UGGUCUuGGA-CGGGCGcGCGc-CGCGG- -5'
11854 5' -63.3 NC_003266.2 + 9788 0.69 0.13223
Target:  5'- cGCguGAGCCcaaaCCCGCGCuGCGGCuggacgagcGCCa -3'
miRNA:   3'- -UGguCUUGGac--GGGCGCG-CGCCG---------CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.