Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11854 | 5' | -63.3 | NC_003266.2 | + | 8535 | 1.1 | 0.000072 |
Target: 5'- uACCAGAACCUGCCCGCGCGCGGCGCCg -3' miRNA: 3'- -UGGUCUUGGACGGGCGCGCGCCGCGG- -5' |
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11854 | 5' | -63.3 | NC_003266.2 | + | 15402 | 0.67 | 0.213599 |
Target: 5'- cCCAGGGCCuUGUagaCGUaggggcagGUGCGGCGUCu -3' miRNA: 3'- uGGUCUUGG-ACGg--GCG--------CGCGCCGCGG- -5' |
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11854 | 5' | -63.3 | NC_003266.2 | + | 16341 | 0.66 | 0.224917 |
Target: 5'- uGCCGGAccGCUcGCCagGCGCgaaaaccaccGUGGUGCCg -3' miRNA: 3'- -UGGUCU--UGGaCGGg-CGCG----------CGCCGCGG- -5' |
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11854 | 5' | -63.3 | NC_003266.2 | + | 16575 | 0.66 | 0.249079 |
Target: 5'- cGCCcucGcGCUUcaaGCCC-CGaCGCGGCGCCg -3' miRNA: 3'- -UGGu--CuUGGA---CGGGcGC-GCGCCGCGG- -5' |
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11854 | 5' | -63.3 | NC_003266.2 | + | 18086 | 0.72 | 0.08735 |
Target: 5'- cGCCugAGGGCgaGCCCccggucGCGCGCGG-GCCa -3' miRNA: 3'- -UGG--UCUUGgaCGGG------CGCGCGCCgCGG- -5' |
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11854 | 5' | -63.3 | NC_003266.2 | + | 3716 | 0.7 | 0.118516 |
Target: 5'- aGCCGGcGCCcaugGCcauuCCGCGCaCGGCGCUg -3' miRNA: 3'- -UGGUCuUGGa---CG----GGCGCGcGCCGCGG- -5' |
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11854 | 5' | -63.3 | NC_003266.2 | + | 11768 | 0.69 | 0.143073 |
Target: 5'- cGCC---GCCUGCUgGCgcuuaccGCGCGGCGCa -3' miRNA: 3'- -UGGucuUGGACGGgCG-------CGCGCCGCGg -5' |
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11854 | 5' | -63.3 | NC_003266.2 | + | 8165 | 0.69 | 0.151426 |
Target: 5'- cGCCGaggucuGGACCUGCCuCcCGCGCGG-GCUc -3' miRNA: 3'- -UGGU------CUUGGACGG-GcGCGCGCCgCGG- -5' |
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11854 | 5' | -63.3 | NC_003266.2 | + | 9308 | 0.68 | 0.173119 |
Target: 5'- gACCG---UCUGCCCGUGCGC--CGCCg -3' miRNA: 3'- -UGGUcuuGGACGGGCGCGCGccGCGG- -5' |
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11854 | 5' | -63.3 | NC_003266.2 | + | 8479 | 0.67 | 0.208126 |
Target: 5'- uCCcGAGCCgccccuaccGCCCgGCGCGCGuccuCGCCg -3' miRNA: 3'- uGGuCUUGGa--------CGGG-CGCGCGCc---GCGG- -5' |
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11854 | 5' | -63.3 | NC_003266.2 | + | 16292 | 0.68 | 0.182548 |
Target: 5'- cACCGGAcgcACUUuccGCCCGCGCcacuGCacGCGCCu -3' miRNA: 3'- -UGGUCU---UGGA---CGGGCGCG----CGc-CGCGG- -5' |
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11854 | 5' | -63.3 | NC_003266.2 | + | 22430 | 0.69 | 0.155557 |
Target: 5'- cCCAGAACC-GCUgggggCGCaGCGUGGUGCa -3' miRNA: 3'- uGGUCUUGGaCGG-----GCG-CGCGCCGCGg -5' |
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11854 | 5' | -63.3 | NC_003266.2 | + | 11241 | 0.76 | 0.039452 |
Target: 5'- gACCAGGuugGCCgcgGCCaCGUGCGCGcGCGCa -3' miRNA: 3'- -UGGUCU---UGGa--CGG-GCGCGCGC-CGCGg -5' |
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11854 | 5' | -63.3 | NC_003266.2 | + | 6410 | 0.68 | 0.182548 |
Target: 5'- uGCUGGAcccCCUGCCCcccuucugcucGCGCaaggGCGGcCGCCu -3' miRNA: 3'- -UGGUCUu--GGACGGG-----------CGCG----CGCC-GCGG- -5' |
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11854 | 5' | -63.3 | NC_003266.2 | + | 5164 | 0.74 | 0.057203 |
Target: 5'- gACCGGAcCCUGgCCGCGC-UGGaCGCCc -3' miRNA: 3'- -UGGUCUuGGACgGGCGCGcGCC-GCGG- -5' |
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11854 | 5' | -63.3 | NC_003266.2 | + | 21859 | 0.69 | 0.151834 |
Target: 5'- uACCAGuuccgcaacgugucCCUGCCCGCGgGCcaUGCCg -3' miRNA: 3'- -UGGUCuu------------GGACGGGCGCgCGccGCGG- -5' |
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11854 | 5' | -63.3 | NC_003266.2 | + | 11339 | 0.67 | 0.197542 |
Target: 5'- cCCAGGgucACCUcCUCGCGCGCGaucaggguGCGCa -3' miRNA: 3'- uGGUCU---UGGAcGGGCGCGCGC--------CGCGg -5' |
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11854 | 5' | -63.3 | NC_003266.2 | + | 6363 | 0.66 | 0.224917 |
Target: 5'- uGCUGGAccaACgaGCCCcUGCGCGGCgaggugGCCa -3' miRNA: 3'- -UGGUCU---UGgaCGGGcGCGCGCCG------CGG- -5' |
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11854 | 5' | -63.3 | NC_003266.2 | + | 15907 | 0.73 | 0.075914 |
Target: 5'- gGCCGcgcgucuccGAGuCCUGCCgGCGC-UGGCGCCu -3' miRNA: 3'- -UGGU---------CUU-GGACGGgCGCGcGCCGCGG- -5' |
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11854 | 5' | -63.3 | NC_003266.2 | + | 12211 | 0.7 | 0.125199 |
Target: 5'- gGCCAGcACCUuCUCGUGCGUGGgGUUg -3' miRNA: 3'- -UGGUCuUGGAcGGGCGCGCGCCgCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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