Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 11859 | 5' | -57.4 | NC_003266.2 | + | 27150 | 0.66 | 0.449369 |
|
Target: 5'- -cCCACCuGCUUCguaucuucagccagCGCCCGauccuGGUCCAGCg -3' miRNA: 3'- guGGUGG-UGAGG--------------GCGGGU-----UCAGGUUG- -5' |
|||||||
| 11859 | 5' | -57.4 | NC_003266.2 | + | 10822 | 0.66 | 0.452392 |
|
Target: 5'- aGCCGgCGCUUCUGCCUccGccCCAGCa -3' miRNA: 3'- gUGGUgGUGAGGGCGGGuuCa-GGUUG- -5' |
|||||||
| 11859 | 5' | -57.4 | NC_003266.2 | + | 6293 | 0.66 | 0.452392 |
|
Target: 5'- gGCCACC--UCgCCGCgCAggggcucguuGGUCCAGCa -3' miRNA: 3'- gUGGUGGugAG-GGCGgGU----------UCAGGUUG- -5' |
|||||||
| 11859 | 5' | -57.4 | NC_003266.2 | + | 4872 | 0.66 | 0.462548 |
|
Target: 5'- uCGCgCACCAgUUCCGCCagGAGUcgcucuccgcCCAGCg -3' miRNA: 3'- -GUG-GUGGUgAGGGCGGg-UUCA----------GGUUG- -5' |
|||||||
| 11859 | 5' | -57.4 | NC_003266.2 | + | 14736 | 0.66 | 0.472823 |
|
Target: 5'- aGCCACCGC-CUCuaCCGAgGUCCGGg -3' miRNA: 3'- gUGGUGGUGaGGGcgGGUU-CAGGUUg -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home