Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11861 | 3' | -57.3 | NC_003266.2 | + | 30338 | 0.67 | 0.440709 |
Target: 5'- uGGACCGUUCGCCuccuacGUGCucuuuGCCu -3' miRNA: 3'- gCCUGGCGAGCGGuc----CGCGcuuu-UGG- -5' |
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11861 | 3' | -57.3 | NC_003266.2 | + | 23263 | 0.74 | 0.164046 |
Target: 5'- gGGGCUcugccaGCcaccCGCCGGGcCGCGAGAGCCc -3' miRNA: 3'- gCCUGG------CGa---GCGGUCC-GCGCUUUUGG- -5' |
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11861 | 3' | -57.3 | NC_003266.2 | + | 22383 | 0.67 | 0.430968 |
Target: 5'- gCGcGCUGCUgcgugcacgaCGCCGGGUGCGcu-ACCa -3' miRNA: 3'- -GCcUGGCGA----------GCGGUCCGCGCuuuUGG- -5' |
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11861 | 3' | -57.3 | NC_003266.2 | + | 21913 | 0.73 | 0.17331 |
Target: 5'- aGGGCgcccaGCagGUCGGGCGCGGAGAUCu -3' miRNA: 3'- gCCUGg----CGagCGGUCCGCGCUUUUGG- -5' |
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11861 | 3' | -57.3 | NC_003266.2 | + | 21333 | 0.69 | 0.332757 |
Target: 5'- gGGACUGCUgCGCCGcaGCGCccuGGCCa -3' miRNA: 3'- gCCUGGCGA-GCGGUc-CGCGcuuUUGG- -5' |
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11861 | 3' | -57.3 | NC_003266.2 | + | 21159 | 0.66 | 0.522738 |
Target: 5'- aGGGcCCGCaCcCCAGGuCGCGGAugauGGCCc -3' miRNA: 3'- gCCU-GGCGaGcGGUCC-GCGCUU----UUGG- -5' |
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11861 | 3' | -57.3 | NC_003266.2 | + | 20460 | 0.67 | 0.440709 |
Target: 5'- aCGGugCGCuugauuucgaacUCGUUGGGCGUcaGGAGCCg -3' miRNA: 3'- -GCCugGCG------------AGCGGUCCGCGc-UUUUGG- -5' |
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11861 | 3' | -57.3 | NC_003266.2 | + | 17311 | 0.68 | 0.384228 |
Target: 5'- gGGAUCGCcccgaUCGCCGcGGCGaugauGggGAUCa -3' miRNA: 3'- gCCUGGCG-----AGCGGU-CCGCg----CuuUUGG- -5' |
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11861 | 3' | -57.3 | NC_003266.2 | + | 17251 | 0.68 | 0.384228 |
Target: 5'- --aACCGCUUGCUgauGGCGCGcc-GCCg -3' miRNA: 3'- gccUGGCGAGCGGu--CCGCGCuuuUGG- -5' |
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11861 | 3' | -57.3 | NC_003266.2 | + | 17003 | 0.71 | 0.263335 |
Target: 5'- cCGcGGCCGCgCGCCucugacccugccgcGGGCGCGcu-ACCa -3' miRNA: 3'- -GC-CUGGCGaGCGG--------------UCCGCGCuuuUGG- -5' |
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11861 | 3' | -57.3 | NC_003266.2 | + | 16929 | 0.67 | 0.430968 |
Target: 5'- gCGuGCCGCgguaGCCcGGCGUGggGAUg -3' miRNA: 3'- -GCcUGGCGag--CGGuCCGCGCuuUUGg -5' |
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11861 | 3' | -57.3 | NC_003266.2 | + | 16339 | 1.12 | 0.000228 |
Target: 5'- cCGGACCGCUCGCCAGGCGCGAAAACCa -3' miRNA: 3'- -GCCUGGCGAGCGGUCCGCGCUUUUGG- -5' |
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11861 | 3' | -57.3 | NC_003266.2 | + | 16136 | 0.76 | 0.110821 |
Target: 5'- gGGGCCGUagaUC-UCAGGCGCGAuGACCu -3' miRNA: 3'- gCCUGGCG---AGcGGUCCGCGCUuUUGG- -5' |
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11861 | 3' | -57.3 | NC_003266.2 | + | 15766 | 0.69 | 0.348494 |
Target: 5'- cCGGgcgaugcGCCGC-CGCCGgcucuuGGCGCGGGcguACCg -3' miRNA: 3'- -GCC-------UGGCGaGCGGU------CCGCGCUUu--UGG- -5' |
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11861 | 3' | -57.3 | NC_003266.2 | + | 13583 | 0.69 | 0.357844 |
Target: 5'- --cGCCGCUgGCacgaCAGGCaGCGggGACUg -3' miRNA: 3'- gccUGGCGAgCG----GUCCG-CGCuuUUGG- -5' |
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11861 | 3' | -57.3 | NC_003266.2 | + | 12809 | 0.67 | 0.430968 |
Target: 5'- aGGuCUGCUCGuCCAcGUGCGccuGGCCa -3' miRNA: 3'- gCCuGGCGAGC-GGUcCGCGCuu-UUGG- -5' |
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11861 | 3' | -57.3 | NC_003266.2 | + | 12578 | 0.66 | 0.491194 |
Target: 5'- gGGACUGUggggCGUgCAGGCuccgguCGggGACCg -3' miRNA: 3'- gCCUGGCGa---GCG-GUCCGc-----GCuuUUGG- -5' |
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11861 | 3' | -57.3 | NC_003266.2 | + | 12292 | 0.66 | 0.512131 |
Target: 5'- uGGACCGCauggUGaCCGacGuGCGCG-AAGCCg -3' miRNA: 3'- gCCUGGCGa---GC-GGU--C-CGCGCuUUUGG- -5' |
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11861 | 3' | -57.3 | NC_003266.2 | + | 11822 | 0.69 | 0.361288 |
Target: 5'- gCGGACCugcacuggcagcccaGC-CGCCGGGUcuUGGAAGCCg -3' miRNA: 3'- -GCCUGG---------------CGaGCGGUCCGc-GCUUUUGG- -5' |
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11861 | 3' | -57.3 | NC_003266.2 | + | 11699 | 0.66 | 0.522738 |
Target: 5'- aGGaugcGCCGCgcgguaagCGCCAgcaggcGGCGCGAgcuGAGCg -3' miRNA: 3'- gCC----UGGCGa-------GCGGU------CCGCGCU---UUUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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