miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11863 5' -53.9 NC_003266.2 + 22200 1.15 0.000294
Target:  5'- uGCGAUUGCAACCACAAGCCCGGCUGCg -3'
miRNA:   3'- -CGCUAACGUUGGUGUUCGGGCCGACG- -5'
11863 5' -53.9 NC_003266.2 + 24041 0.75 0.217887
Target:  5'- aGCGuUUGCGGCC-CGAGUCuCGuGCUGCc -3'
miRNA:   3'- -CGCuAACGUUGGuGUUCGG-GC-CGACG- -5'
11863 5' -53.9 NC_003266.2 + 33284 0.72 0.300776
Target:  5'- gGCGGUUGUGGCgCAuCAGGCCCcGCaGCa -3'
miRNA:   3'- -CGCUAACGUUG-GU-GUUCGGGcCGaCG- -5'
11863 5' -53.9 NC_003266.2 + 25068 0.71 0.339319
Target:  5'- -aGGUUGCAGCgGCAguggcacucgagcaGGCCCucGCUGCu -3'
miRNA:   3'- cgCUAACGUUGgUGU--------------UCGGGc-CGACG- -5'
11863 5' -53.9 NC_003266.2 + 3887 0.71 0.359447
Target:  5'- cCGug-GCAACCGC-GGCCCGcGuCUGCu -3'
miRNA:   3'- cGCuaaCGUUGGUGuUCGGGC-C-GACG- -5'
11863 5' -53.9 NC_003266.2 + 31518 0.71 0.377615
Target:  5'- ----cUGguACUGCAGGCCCcggcgGGCUGCa -3'
miRNA:   3'- cgcuaACguUGGUGUUCGGG-----CCGACG- -5'
11863 5' -53.9 NC_003266.2 + 15753 0.71 0.386928
Target:  5'- aUGcgUGCGG-CGCGAGCCUuGCUGCg -3'
miRNA:   3'- cGCuaACGUUgGUGUUCGGGcCGACG- -5'
11863 5' -53.9 NC_003266.2 + 9634 0.7 0.406002
Target:  5'- gGCGAggaGC-ACCAggucuuUggGCCCGGCUuGCu -3'
miRNA:   3'- -CGCUaa-CGuUGGU------GuuCGGGCCGA-CG- -5'
11863 5' -53.9 NC_003266.2 + 6824 0.69 0.445867
Target:  5'- gGCGuaggagucUUGCAGCUuggcgACAAGCUCGGCgGUg -3'
miRNA:   3'- -CGCu-------AACGUUGG-----UGUUCGGGCCGaCG- -5'
11863 5' -53.9 NC_003266.2 + 21048 0.69 0.487824
Target:  5'- ---cUUGCAagaagccaugGCCGCGGGCuCCGGCgaGCa -3'
miRNA:   3'- cgcuAACGU----------UGGUGUUCG-GGCCGa-CG- -5'
11863 5' -53.9 NC_003266.2 + 13367 0.69 0.487824
Target:  5'- aGCGAgcuggGCAggAUCACGcGCCCGcGCUuGCu -3'
miRNA:   3'- -CGCUaa---CGU--UGGUGUuCGGGC-CGA-CG- -5'
11863 5' -53.9 NC_003266.2 + 27232 0.69 0.498604
Target:  5'- ----cUGCAACCAC---CCCGGcCUGCa -3'
miRNA:   3'- cgcuaACGUUGGUGuucGGGCC-GACG- -5'
11863 5' -53.9 NC_003266.2 + 24668 0.68 0.50949
Target:  5'- ----cUGCuGCCACAcGCCCauGGCUGUc -3'
miRNA:   3'- cgcuaACGuUGGUGUuCGGG--CCGACG- -5'
11863 5' -53.9 NC_003266.2 + 3648 0.68 0.530438
Target:  5'- aGCGccgUGCGcggaaugGCCAUggGCgCCGGCUa- -3'
miRNA:   3'- -CGCua-ACGU-------UGGUGuuCG-GGCCGAcg -5'
11863 5' -53.9 NC_003266.2 + 15706 0.68 0.542708
Target:  5'- -aGAgccgGCGGCgGCGcaucGCCCGGCgGCa -3'
miRNA:   3'- cgCUaa--CGUUGgUGUu---CGGGCCGaCG- -5'
11863 5' -53.9 NC_003266.2 + 7923 0.68 0.542708
Target:  5'- -----aGCGGCCACAGuGCUCGcaacGCUGCa -3'
miRNA:   3'- cgcuaaCGUUGGUGUU-CGGGC----CGACG- -5'
11863 5' -53.9 NC_003266.2 + 16941 0.68 0.553944
Target:  5'- cGUGGUagaaGCGcguGCCGCGguAGCCCGGCgUGg -3'
miRNA:   3'- -CGCUAa---CGU---UGGUGU--UCGGGCCG-ACg -5'
11863 5' -53.9 NC_003266.2 + 15613 0.67 0.56185
Target:  5'- gGUGGUgcGCGACCGCAcgcGGCCCuugagggcgccccaGGgaGCg -3'
miRNA:   3'- -CGCUAa-CGUUGGUGU---UCGGG--------------CCgaCG- -5'
11863 5' -53.9 NC_003266.2 + 23180 0.67 0.564115
Target:  5'- gGCGGagGCGACgggcucuCGC-GGCCCGGCgggugGCu -3'
miRNA:   3'- -CGCUaaCGUUG-------GUGuUCGGGCCGa----CG- -5'
11863 5' -53.9 NC_003266.2 + 10091 0.67 0.57661
Target:  5'- gGCGGUagaGCGGCCAUc-GCUCGGUgGCg -3'
miRNA:   3'- -CGCUAa--CGUUGGUGuuCGGGCCGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.