Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11863 | 5' | -53.9 | NC_003266.2 | + | 33284 | 0.72 | 0.300776 |
Target: 5'- gGCGGUUGUGGCgCAuCAGGCCCcGCaGCa -3' miRNA: 3'- -CGCUAACGUUG-GU-GUUCGGGcCGaCG- -5' |
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11863 | 5' | -53.9 | NC_003266.2 | + | 24846 | 0.67 | 0.57661 |
Target: 5'- cGgGAUccUGcCGGCCACcuGCuCCGcGCUGCc -3' miRNA: 3'- -CgCUA--AC-GUUGGUGuuCG-GGC-CGACG- -5' |
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11863 | 5' | -53.9 | NC_003266.2 | + | 10091 | 0.67 | 0.57661 |
Target: 5'- gGCGGUagaGCGGCCAUc-GCUCGGUgGCg -3' miRNA: 3'- -CGCUAa--CGUUGGUGuuCGGGCCGaCG- -5' |
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11863 | 5' | -53.9 | NC_003266.2 | + | 6663 | 0.67 | 0.599477 |
Target: 5'- uGCGAg-GgGGCgAgGAGCCCGGCUcCg -3' miRNA: 3'- -CGCUaaCgUUGgUgUUCGGGCCGAcG- -5' |
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11863 | 5' | -53.9 | NC_003266.2 | + | 9774 | 0.67 | 0.61096 |
Target: 5'- cGCGGccgUGCAuacgcgugaGCC-CAAaCCCGcGCUGCg -3' miRNA: 3'- -CGCUa--ACGU---------UGGuGUUcGGGC-CGACG- -5' |
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11863 | 5' | -53.9 | NC_003266.2 | + | 3826 | 0.66 | 0.622464 |
Target: 5'- -----aGCAGaCGCGGGCCgCGGUUGCc -3' miRNA: 3'- cgcuaaCGUUgGUGUUCGG-GCCGACG- -5' |
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11863 | 5' | -53.9 | NC_003266.2 | + | 7287 | 0.66 | 0.622464 |
Target: 5'- uGCGAgugaUGCGgaaagGCUgggGCAccucGGCCCGGUUGUu -3' miRNA: 3'- -CGCUa---ACGU-----UGG---UGU----UCGGGCCGACG- -5' |
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11863 | 5' | -53.9 | NC_003266.2 | + | 5202 | 0.66 | 0.633977 |
Target: 5'- uGCGAgggUGC-GCUuCAGGCucauCCGGCUGg -3' miRNA: 3'- -CGCUa--ACGuUGGuGUUCG----GGCCGACg -5' |
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11863 | 5' | -53.9 | NC_003266.2 | + | 21901 | 0.66 | 0.679896 |
Target: 5'- cGCGucaGUUGCAgggcGCCcaGCAGGUCgGGC-GCg -3' miRNA: 3'- -CGC---UAACGU----UGG--UGUUCGGgCCGaCG- -5' |
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11863 | 5' | -53.9 | NC_003266.2 | + | 23180 | 0.67 | 0.564115 |
Target: 5'- gGCGGagGCGACgggcucuCGC-GGCCCGGCgggugGCu -3' miRNA: 3'- -CGCUaaCGUUG-------GUGuUCGGGCCGa----CG- -5' |
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11863 | 5' | -53.9 | NC_003266.2 | + | 15706 | 0.68 | 0.542708 |
Target: 5'- -aGAgccgGCGGCgGCGcaucGCCCGGCgGCa -3' miRNA: 3'- cgCUaa--CGUUGgUGUu---CGGGCCGaCG- -5' |
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11863 | 5' | -53.9 | NC_003266.2 | + | 7923 | 0.68 | 0.542708 |
Target: 5'- -----aGCGGCCACAGuGCUCGcaacGCUGCa -3' miRNA: 3'- cgcuaaCGUUGGUGUU-CGGGC----CGACG- -5' |
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11863 | 5' | -53.9 | NC_003266.2 | + | 31518 | 0.71 | 0.377615 |
Target: 5'- ----cUGguACUGCAGGCCCcggcgGGCUGCa -3' miRNA: 3'- cgcuaACguUGGUGUUCGGG-----CCGACG- -5' |
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11863 | 5' | -53.9 | NC_003266.2 | + | 15753 | 0.71 | 0.386928 |
Target: 5'- aUGcgUGCGG-CGCGAGCCUuGCUGCg -3' miRNA: 3'- cGCuaACGUUgGUGUUCGGGcCGACG- -5' |
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11863 | 5' | -53.9 | NC_003266.2 | + | 9634 | 0.7 | 0.406002 |
Target: 5'- gGCGAggaGC-ACCAggucuuUggGCCCGGCUuGCu -3' miRNA: 3'- -CGCUaa-CGuUGGU------GuuCGGGCCGA-CG- -5' |
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11863 | 5' | -53.9 | NC_003266.2 | + | 6824 | 0.69 | 0.445867 |
Target: 5'- gGCGuaggagucUUGCAGCUuggcgACAAGCUCGGCgGUg -3' miRNA: 3'- -CGCu-------AACGUUGG-----UGUUCGGGCCGaCG- -5' |
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11863 | 5' | -53.9 | NC_003266.2 | + | 21048 | 0.69 | 0.487824 |
Target: 5'- ---cUUGCAagaagccaugGCCGCGGGCuCCGGCgaGCa -3' miRNA: 3'- cgcuAACGU----------UGGUGUUCG-GGCCGa-CG- -5' |
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11863 | 5' | -53.9 | NC_003266.2 | + | 13367 | 0.69 | 0.487824 |
Target: 5'- aGCGAgcuggGCAggAUCACGcGCCCGcGCUuGCu -3' miRNA: 3'- -CGCUaa---CGU--UGGUGUuCGGGC-CGA-CG- -5' |
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11863 | 5' | -53.9 | NC_003266.2 | + | 27232 | 0.69 | 0.498604 |
Target: 5'- ----cUGCAACCAC---CCCGGcCUGCa -3' miRNA: 3'- cgcuaACGUUGGUGuucGGGCC-GACG- -5' |
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11863 | 5' | -53.9 | NC_003266.2 | + | 3648 | 0.68 | 0.530438 |
Target: 5'- aGCGccgUGCGcggaaugGCCAUggGCgCCGGCUa- -3' miRNA: 3'- -CGCua-ACGU-------UGGUGuuCG-GGCCGAcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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