miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11865 3' -58.8 NC_003266.2 + 10860 0.81 0.035599
Target:  5'- --cCAGCCACUaCCGCCGCGGCcGCCg -3'
miRNA:   3'- cuuGUUGGUGGcGGCGGCGUCGuCGG- -5'
11865 3' -58.8 NC_003266.2 + 10921 0.72 0.160992
Target:  5'- -cACGGCgGCCGCgGCgGUAGUGGCUg -3'
miRNA:   3'- cuUGUUGgUGGCGgCGgCGUCGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 11163 0.67 0.32042
Target:  5'- gGAuCAGCC-CUGCgCGCgCGCAcGUGGCCg -3'
miRNA:   3'- -CUuGUUGGuGGCG-GCG-GCGU-CGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 11416 0.66 0.407364
Target:  5'- gGAACAGCUG-CGCCGUCaGCGGUuuGCUg -3'
miRNA:   3'- -CUUGUUGGUgGCGGCGG-CGUCGu-CGG- -5'
11865 3' -58.8 NC_003266.2 + 11500 0.71 0.179779
Target:  5'- gGAGCGcggGCUGCCGCUGuCCGagaagcuGGCGGCCa -3'
miRNA:   3'- -CUUGU---UGGUGGCGGC-GGCg------UCGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 11575 0.68 0.297197
Target:  5'- ---uGAUgGCCGCCaGCUucucggacaGCGGCAGCCc -3'
miRNA:   3'- cuugUUGgUGGCGG-CGG---------CGUCGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 11834 0.79 0.049348
Target:  5'- uGGCAGCCcaGCCGCCgggucuuggaaGCCGCGGCGGUCc -3'
miRNA:   3'- cUUGUUGG--UGGCGG-----------CGGCGUCGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 11911 0.67 0.328457
Target:  5'- aAGgGACCGCCGCgGCUuccaagacccgGCGGCugggcuGCCa -3'
miRNA:   3'- cUUgUUGGUGGCGgCGG-----------CGUCGu-----CGG- -5'
11865 3' -58.8 NC_003266.2 + 11956 0.67 0.34246
Target:  5'- cAACAGCCACCuccugauccccaauGCgggcggCGCUGCAGagcCAGCCg -3'
miRNA:   3'- cUUGUUGGUGG--------------CG------GCGGCGUC---GUCGG- -5'
11865 3' -58.8 NC_003266.2 + 12069 0.69 0.254715
Target:  5'- -cGCAACC-CCGaaGCCuuuagaCAGCAGCCc -3'
miRNA:   3'- cuUGUUGGuGGCggCGGc-----GUCGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 12710 0.66 0.407364
Target:  5'- aGGGC-GCCACCaGCaGCaGCAGCAGgCg -3'
miRNA:   3'- -CUUGuUGGUGG-CGgCGgCGUCGUCgG- -5'
11865 3' -58.8 NC_003266.2 + 13287 0.74 0.105387
Target:  5'- --cCGGCCGCacggguGCUGCCGCAGCGGUg -3'
miRNA:   3'- cuuGUUGGUGg-----CGGCGGCGUCGUCGg -5'
11865 3' -58.8 NC_003266.2 + 13363 0.73 0.121557
Target:  5'- uGGCGGCCucgggcACCGCUGCgGCAGCAcCCg -3'
miRNA:   3'- cUUGUUGG------UGGCGGCGgCGUCGUcGG- -5'
11865 3' -58.8 NC_003266.2 + 13563 0.67 0.353456
Target:  5'- gGGGCAguGCCGcCCGUaaaCGCCGCuggcacgacaGGCAGCg -3'
miRNA:   3'- -CUUGU--UGGU-GGCG---GCGGCG----------UCGUCGg -5'
11865 3' -58.8 NC_003266.2 + 13617 0.66 0.370854
Target:  5'- gGGACGAUgAggauuCCGCCGaCGaCAGCAGCg -3'
miRNA:   3'- -CUUGUUGgU-----GGCGGCgGC-GUCGUCGg -5'
11865 3' -58.8 NC_003266.2 + 13922 0.77 0.07024
Target:  5'- -uGCAucGCCGCCGCCGCCGCcauuGCCu -3'
miRNA:   3'- cuUGU--UGGUGGCGGCGGCGucguCGG- -5'
11865 3' -58.8 NC_003266.2 + 14708 0.67 0.32042
Target:  5'- aGAGCGucGCCgcgucaACCGCaGCCGUAGCcaccGCCu -3'
miRNA:   3'- -CUUGU--UGG------UGGCGgCGGCGUCGu---CGG- -5'
11865 3' -58.8 NC_003266.2 + 14759 0.71 0.189884
Target:  5'- gGGGCGauaauuuuGCUAgCGCCGCagcagugGCGGCGGCCa -3'
miRNA:   3'- -CUUGU--------UGGUgGCGGCGg------CGUCGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 14842 0.72 0.160992
Target:  5'- --uCAGCCuugGCCGCCGCCacuGCuGCGGCg -3'
miRNA:   3'- cuuGUUGG---UGGCGGCGG---CGuCGUCGg -5'
11865 3' -58.8 NC_003266.2 + 14879 0.7 0.211596
Target:  5'- cGGACAAgaaaaaCACCGCCuaCCGCAGCugguaccuGGCCu -3'
miRNA:   3'- -CUUGUUg-----GUGGCGGc-GGCGUCG--------UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.