miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11865 3' -58.8 NC_003266.2 + 1856 0.67 0.32042
Target:  5'- uGGCAgaACCACUGCa---GCAGUAGCCu -3'
miRNA:   3'- cUUGU--UGGUGGCGgcggCGUCGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 3607 0.8 0.041308
Target:  5'- cGGugGACgcaGCUGCCGCCGCAGCuGCUg -3'
miRNA:   3'- -CUugUUGg--UGGCGGCGGCGUCGuCGG- -5'
11865 3' -58.8 NC_003266.2 + 3641 0.68 0.297197
Target:  5'- -uGCcGCCAgCGCCGUgCGCGGaauGGCCa -3'
miRNA:   3'- cuUGuUGGUgGCGGCG-GCGUCg--UCGG- -5'
11865 3' -58.8 NC_003266.2 + 3683 0.7 0.229253
Target:  5'- uGGCGGCagaaGCagcaGCUGCgGCGGCAGCUg -3'
miRNA:   3'- cUUGUUGg---UGg---CGGCGgCGUCGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 3884 0.7 0.217348
Target:  5'- uGGCAACCGCgGcCCGCgucugcuccUGCAGCugAGCCa -3'
miRNA:   3'- cUUGUUGGUGgC-GGCG---------GCGUCG--UCGG- -5'
11865 3' -58.8 NC_003266.2 + 4739 0.67 0.353456
Target:  5'- ---gGACuUACCGCaGCCGguGgGGCCg -3'
miRNA:   3'- cuugUUG-GUGGCGgCGGCguCgUCGG- -5'
11865 3' -58.8 NC_003266.2 + 6218 0.67 0.362083
Target:  5'- -uGCAGCucaaCAUCGCCGCCaaGgAGCGcGCCg -3'
miRNA:   3'- cuUGUUG----GUGGCGGCGG--CgUCGU-CGG- -5'
11865 3' -58.8 NC_003266.2 + 6292 0.67 0.362083
Target:  5'- ---uGGCCACCucGCCG-CGCAGgGGCUc -3'
miRNA:   3'- cuugUUGGUGG--CGGCgGCGUCgUCGG- -5'
11865 3' -58.8 NC_003266.2 + 7038 0.68 0.31253
Target:  5'- uAACGGCC-UUGuaGgCGCAGCAGCCc -3'
miRNA:   3'- cUUGUUGGuGGCggCgGCGUCGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 8268 0.72 0.148083
Target:  5'- --uCAACCGCgCGCCGCCGCu---GCCc -3'
miRNA:   3'- cuuGUUGGUG-GCGGCGGCGucguCGG- -5'
11865 3' -58.8 NC_003266.2 + 8530 0.67 0.353456
Target:  5'- ---gAACCugC-CCGCgCGCGGC-GCCg -3'
miRNA:   3'- cuugUUGGugGcGGCG-GCGUCGuCGG- -5'
11865 3' -58.8 NC_003266.2 + 8797 0.7 0.223233
Target:  5'- -cGCGGCCACCGUgGagCGCGcCGGCCg -3'
miRNA:   3'- cuUGUUGGUGGCGgCg-GCGUcGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 9235 0.67 0.32042
Target:  5'- aGGgGGCCugCGUCGCCGgCGGC-GCa -3'
miRNA:   3'- cUUgUUGGugGCGGCGGC-GUCGuCGg -5'
11865 3' -58.8 NC_003266.2 + 9347 0.66 0.370854
Target:  5'- -cGCAGCgUAaagaCGCCGCCGCgcaucuccaGGUGGCCc -3'
miRNA:   3'- cuUGUUG-GUg---GCGGCGGCG---------UCGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 9608 0.67 0.353456
Target:  5'- -cACAccCCACCGCCGCCagaagaaaccguGCu-CAGCCu -3'
miRNA:   3'- cuUGUu-GGUGGCGGCGG------------CGucGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 10097 0.71 0.179779
Target:  5'- aGAGCGGCCAUCGCUcgGUgGCGGgGGCg -3'
miRNA:   3'- -CUUGUUGGUGGCGG--CGgCGUCgUCGg -5'
11865 3' -58.8 NC_003266.2 + 10148 0.71 0.195121
Target:  5'- cGAGCGAUgGCCGCUcuaCCGCcAGCcGCCg -3'
miRNA:   3'- -CUUGUUGgUGGCGGc--GGCG-UCGuCGG- -5'
11865 3' -58.8 NC_003266.2 + 10241 0.67 0.336642
Target:  5'- ----cACCACCGCCGCCgGCAuCA-CCu -3'
miRNA:   3'- cuuguUGGUGGCGGCGG-CGUcGUcGG- -5'
11865 3' -58.8 NC_003266.2 + 10711 0.71 0.169685
Target:  5'- gGGGCAGCCA-CGCCcucguuaGCCGCGGaauuCGGCCg -3'
miRNA:   3'- -CUUGUUGGUgGCGG-------CGGCGUC----GUCGG- -5'
11865 3' -58.8 NC_003266.2 + 10818 0.72 0.165516
Target:  5'- cAACAGCCGgcgcuucugccuCCGCC-CCaGCAGCAGCa -3'
miRNA:   3'- cUUGUUGGU------------GGCGGcGG-CGUCGUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.