miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11865 3' -58.8 NC_003266.2 + 23118 1.11 0.00015
Target:  5'- gGAACAACCACCGCCGCCGCAGCAGCCg -3'
miRNA:   3'- -CUUGUUGGUGGCGGCGGCGUCGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 15866 0.84 0.019567
Target:  5'- -cGCGGCCACgGCgGCgGCAGCGGCCa -3'
miRNA:   3'- cuUGUUGGUGgCGgCGgCGUCGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 15941 0.83 0.023427
Target:  5'- gGGACAugcuggcuaugGCCGCUGCCGCCGCcGUGGCCg -3'
miRNA:   3'- -CUUGU-----------UGGUGGCGGCGGCGuCGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 10860 0.81 0.035599
Target:  5'- --cCAGCCACUaCCGCCGCGGCcGCCg -3'
miRNA:   3'- cuuGUUGGUGGcGGCGGCGUCGuCGG- -5'
11865 3' -58.8 NC_003266.2 + 3607 0.8 0.041308
Target:  5'- cGGugGACgcaGCUGCCGCCGCAGCuGCUg -3'
miRNA:   3'- -CUugUUGg--UGGCGGCGGCGUCGuCGG- -5'
11865 3' -58.8 NC_003266.2 + 11834 0.79 0.049348
Target:  5'- uGGCAGCCcaGCCGCCgggucuuggaaGCCGCGGCGGUCc -3'
miRNA:   3'- cUUGUUGG--UGGCGG-----------CGGCGUCGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 16150 0.77 0.066245
Target:  5'- -----uUCACCGCCGCCGCGG-GGCCg -3'
miRNA:   3'- cuuguuGGUGGCGGCGGCGUCgUCGG- -5'
11865 3' -58.8 NC_003266.2 + 13922 0.77 0.07024
Target:  5'- -uGCAucGCCGCCGCCGCCGCcauuGCCu -3'
miRNA:   3'- cuUGU--UGGUGGCGGCGGCGucguCGG- -5'
11865 3' -58.8 NC_003266.2 + 26016 0.77 0.07024
Target:  5'- -cACuGCCGCCGCCGCCGCuguggauuuucuAGCuGCUg -3'
miRNA:   3'- cuUGuUGGUGGCGGCGGCG------------UCGuCGG- -5'
11865 3' -58.8 NC_003266.2 + 25010 0.76 0.086122
Target:  5'- cGAguGCCACUGCCGCUGCAaccucuGCAcGCCg -3'
miRNA:   3'- cUUguUGGUGGCGGCGGCGU------CGU-CGG- -5'
11865 3' -58.8 NC_003266.2 + 27022 0.75 0.088654
Target:  5'- ---gGACCACUGCCGCCGCuuucGCuGCUu -3'
miRNA:   3'- cuugUUGGUGGCGGCGGCGu---CGuCGG- -5'
11865 3' -58.8 NC_003266.2 + 13287 0.74 0.105387
Target:  5'- --cCGGCCGCacggguGCUGCCGCAGCGGUg -3'
miRNA:   3'- cuuGUUGGUGg-----CGGCGGCGUCGUCGg -5'
11865 3' -58.8 NC_003266.2 + 23388 0.74 0.105387
Target:  5'- aGAGCuuAACCGCC-CCGCCGCc-CAGCCc -3'
miRNA:   3'- -CUUG--UUGGUGGcGGCGGCGucGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 16931 0.74 0.108451
Target:  5'- aGACcACCAcCCGCCGCCGUcGUcGCCg -3'
miRNA:   3'- cUUGuUGGU-GGCGGCGGCGuCGuCGG- -5'
11865 3' -58.8 NC_003266.2 + 21330 0.74 0.118149
Target:  5'- cGAGgGACUGCUG-CGCCGCAGCgcccuGGCCa -3'
miRNA:   3'- -CUUgUUGGUGGCgGCGGCGUCG-----UCGG- -5'
11865 3' -58.8 NC_003266.2 + 13363 0.73 0.121557
Target:  5'- uGGCGGCCucgggcACCGCUGCgGCAGCAcCCg -3'
miRNA:   3'- cUUGUUGG------UGGCGGCGgCGUCGUcGG- -5'
11865 3' -58.8 NC_003266.2 + 18396 0.72 0.143993
Target:  5'- ---uGACCACCGaCCGCaGcCAGCGGCUg -3'
miRNA:   3'- cuugUUGGUGGC-GGCGgC-GUCGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 8268 0.72 0.148083
Target:  5'- --uCAACCGCgCGCCGCCGCu---GCCc -3'
miRNA:   3'- cuuGUUGGUG-GCGGCGGCGucguCGG- -5'
11865 3' -58.8 NC_003266.2 + 23353 0.72 0.152278
Target:  5'- -uGCccCCACCGCCGaCaagaaGCAGCAGCa -3'
miRNA:   3'- cuUGuuGGUGGCGGC-Gg----CGUCGUCGg -5'
11865 3' -58.8 NC_003266.2 + 10921 0.72 0.160992
Target:  5'- -cACGGCgGCCGCgGCgGUAGUGGCUg -3'
miRNA:   3'- cuUGUUGgUGGCGgCGgCGUCGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.