miRNA display CGI


Results 1 - 20 of 81 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11865 3' -58.8 NC_003266.2 + 14879 0.7 0.211596
Target:  5'- cGGACAAgaaaaaCACCGCCuaCCGCAGCugguaccuGGCCu -3'
miRNA:   3'- -CUUGUUg-----GUGGCGGc-GGCGUCG--------UCGG- -5'
11865 3' -58.8 NC_003266.2 + 10818 0.72 0.165516
Target:  5'- cAACAGCCGgcgcuucugccuCCGCC-CCaGCAGCAGCa -3'
miRNA:   3'- cUUGUUGGU------------GGCGGcGG-CGUCGUCGg -5'
11865 3' -58.8 NC_003266.2 + 16965 0.71 0.16875
Target:  5'- uGAACucCCGCUGCCGCCcugguGCGgagaguguaccgccGCGGCCg -3'
miRNA:   3'- -CUUGuuGGUGGCGGCGG-----CGU--------------CGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 10097 0.71 0.179779
Target:  5'- aGAGCGGCCAUCGCUcgGUgGCGGgGGCg -3'
miRNA:   3'- -CUUGUUGGUGGCGG--CGgCGUCgUCGg -5'
11865 3' -58.8 NC_003266.2 + 11500 0.71 0.179779
Target:  5'- gGAGCGcggGCUGCCGCUGuCCGagaagcuGGCGGCCa -3'
miRNA:   3'- -CUUGU---UGGUGGCGGC-GGCg------UCGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 14759 0.71 0.189884
Target:  5'- gGGGCGauaauuuuGCUAgCGCCGCagcagugGCGGCGGCCa -3'
miRNA:   3'- -CUUGU--------UGGUgGCGGCGg------CGUCGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 25590 0.71 0.191964
Target:  5'- aGAAgUAGCCGCCGCCGCCagaccgucguccucgGCggagaaagcaAGCAGCa -3'
miRNA:   3'- -CUU-GUUGGUGGCGGCGG---------------CG----------UCGUCGg -5'
11865 3' -58.8 NC_003266.2 + 15271 0.71 0.195121
Target:  5'- ---gGACC-CUGCCGCugCGCAGCAGUa -3'
miRNA:   3'- cuugUUGGuGGCGGCG--GCGUCGUCGg -5'
11865 3' -58.8 NC_003266.2 + 23052 0.71 0.195121
Target:  5'- uGGGCGGCUGCUGCgGCgGCGGUGGUUg -3'
miRNA:   3'- -CUUGUUGGUGGCGgCGgCGUCGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 23353 0.72 0.152278
Target:  5'- -uGCccCCACCGCCGaCaagaaGCAGCAGCa -3'
miRNA:   3'- cuUGuuGGUGGCGGC-Gg----CGUCGUCGg -5'
11865 3' -58.8 NC_003266.2 + 18396 0.72 0.143993
Target:  5'- ---uGACCACCGaCCGCaGcCAGCGGCUg -3'
miRNA:   3'- cuugUUGGUGGC-GGCGgC-GUCGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 21330 0.74 0.118149
Target:  5'- cGAGgGACUGCUG-CGCCGCAGCgcccuGGCCa -3'
miRNA:   3'- -CUUgUUGGUGGCgGCGGCGUCG-----UCGG- -5'
11865 3' -58.8 NC_003266.2 + 10860 0.81 0.035599
Target:  5'- --cCAGCCACUaCCGCCGCGGCcGCCg -3'
miRNA:   3'- cuuGUUGGUGGcGGCGGCGUCGuCGG- -5'
11865 3' -58.8 NC_003266.2 + 3607 0.8 0.041308
Target:  5'- cGGugGACgcaGCUGCCGCCGCAGCuGCUg -3'
miRNA:   3'- -CUugUUGg--UGGCGGCGGCGUCGuCGG- -5'
11865 3' -58.8 NC_003266.2 + 11834 0.79 0.049348
Target:  5'- uGGCAGCCcaGCCGCCgggucuuggaaGCCGCGGCGGUCc -3'
miRNA:   3'- cUUGUUGG--UGGCGG-----------CGGCGUCGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 25010 0.76 0.086122
Target:  5'- cGAguGCCACUGCCGCUGCAaccucuGCAcGCCg -3'
miRNA:   3'- cUUguUGGUGGCGGCGGCGU------CGU-CGG- -5'
11865 3' -58.8 NC_003266.2 + 27022 0.75 0.088654
Target:  5'- ---gGACCACUGCCGCCGCuuucGCuGCUu -3'
miRNA:   3'- cuugUUGGUGGCGGCGGCGu---CGuCGG- -5'
11865 3' -58.8 NC_003266.2 + 23388 0.74 0.105387
Target:  5'- aGAGCuuAACCGCC-CCGCCGCc-CAGCCc -3'
miRNA:   3'- -CUUG--UUGGUGGcGGCGGCGucGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 13287 0.74 0.105387
Target:  5'- --cCGGCCGCacggguGCUGCCGCAGCGGUg -3'
miRNA:   3'- cuuGUUGGUGg-----CGGCGGCGUCGUCGg -5'
11865 3' -58.8 NC_003266.2 + 16931 0.74 0.108451
Target:  5'- aGACcACCAcCCGCCGCCGUcGUcGCCg -3'
miRNA:   3'- cUUGuUGGU-GGCGGCGGCGuCGuCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.