Results 21 - 40 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11865 | 3' | -58.8 | NC_003266.2 | + | 14879 | 0.7 | 0.211596 |
Target: 5'- cGGACAAgaaaaaCACCGCCuaCCGCAGCugguaccuGGCCu -3' miRNA: 3'- -CUUGUUg-----GUGGCGGc-GGCGUCG--------UCGG- -5' |
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11865 | 3' | -58.8 | NC_003266.2 | + | 23052 | 0.71 | 0.195121 |
Target: 5'- uGGGCGGCUGCUGCgGCgGCGGUGGUUg -3' miRNA: 3'- -CUUGUUGGUGGCGgCGgCGUCGUCGG- -5' |
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11865 | 3' | -58.8 | NC_003266.2 | + | 16931 | 0.74 | 0.108451 |
Target: 5'- aGACcACCAcCCGCCGCCGUcGUcGCCg -3' miRNA: 3'- cUUGuUGGU-GGCGGCGGCGuCGuCGG- -5' |
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11865 | 3' | -58.8 | NC_003266.2 | + | 13287 | 0.74 | 0.105387 |
Target: 5'- --cCGGCCGCacggguGCUGCCGCAGCGGUg -3' miRNA: 3'- cuuGUUGGUGg-----CGGCGGCGUCGUCGg -5' |
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11865 | 3' | -58.8 | NC_003266.2 | + | 23388 | 0.74 | 0.105387 |
Target: 5'- aGAGCuuAACCGCC-CCGCCGCc-CAGCCc -3' miRNA: 3'- -CUUG--UUGGUGGcGGCGGCGucGUCGG- -5' |
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11865 | 3' | -58.8 | NC_003266.2 | + | 27022 | 0.75 | 0.088654 |
Target: 5'- ---gGACCACUGCCGCCGCuuucGCuGCUu -3' miRNA: 3'- cuugUUGGUGGCGGCGGCGu---CGuCGG- -5' |
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11865 | 3' | -58.8 | NC_003266.2 | + | 25010 | 0.76 | 0.086122 |
Target: 5'- cGAguGCCACUGCCGCUGCAaccucuGCAcGCCg -3' miRNA: 3'- cUUguUGGUGGCGGCGGCGU------CGU-CGG- -5' |
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11865 | 3' | -58.8 | NC_003266.2 | + | 11834 | 0.79 | 0.049348 |
Target: 5'- uGGCAGCCcaGCCGCCgggucuuggaaGCCGCGGCGGUCc -3' miRNA: 3'- cUUGUUGG--UGGCGG-----------CGGCGUCGUCGG- -5' |
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11865 | 3' | -58.8 | NC_003266.2 | + | 3607 | 0.8 | 0.041308 |
Target: 5'- cGGugGACgcaGCUGCCGCCGCAGCuGCUg -3' miRNA: 3'- -CUugUUGg--UGGCGGCGGCGUCGuCGG- -5' |
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11865 | 3' | -58.8 | NC_003266.2 | + | 10860 | 0.81 | 0.035599 |
Target: 5'- --cCAGCCACUaCCGCCGCGGCcGCCg -3' miRNA: 3'- cuuGUUGGUGGcGGCGGCGUCGuCGG- -5' |
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11865 | 3' | -58.8 | NC_003266.2 | + | 21330 | 0.74 | 0.118149 |
Target: 5'- cGAGgGACUGCUG-CGCCGCAGCgcccuGGCCa -3' miRNA: 3'- -CUUgUUGGUGGCgGCGGCGUCG-----UCGG- -5' |
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11865 | 3' | -58.8 | NC_003266.2 | + | 18396 | 0.72 | 0.143993 |
Target: 5'- ---uGACCACCGaCCGCaGcCAGCGGCUg -3' miRNA: 3'- cuugUUGGUGGC-GGCGgC-GUCGUCGG- -5' |
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11865 | 3' | -58.8 | NC_003266.2 | + | 15271 | 0.71 | 0.195121 |
Target: 5'- ---gGACC-CUGCCGCugCGCAGCAGUa -3' miRNA: 3'- cuugUUGGuGGCGGCG--GCGUCGUCGg -5' |
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11865 | 3' | -58.8 | NC_003266.2 | + | 25590 | 0.71 | 0.191964 |
Target: 5'- aGAAgUAGCCGCCGCCGCCagaccgucguccucgGCggagaaagcaAGCAGCa -3' miRNA: 3'- -CUU-GUUGGUGGCGGCGG---------------CG----------UCGUCGg -5' |
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11865 | 3' | -58.8 | NC_003266.2 | + | 14759 | 0.71 | 0.189884 |
Target: 5'- gGGGCGauaauuuuGCUAgCGCCGCagcagugGCGGCGGCCa -3' miRNA: 3'- -CUUGU--------UGGUgGCGGCGg------CGUCGUCGG- -5' |
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11865 | 3' | -58.8 | NC_003266.2 | + | 11500 | 0.71 | 0.179779 |
Target: 5'- gGAGCGcggGCUGCCGCUGuCCGagaagcuGGCGGCCa -3' miRNA: 3'- -CUUGU---UGGUGGCGGC-GGCg------UCGUCGG- -5' |
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11865 | 3' | -58.8 | NC_003266.2 | + | 10097 | 0.71 | 0.179779 |
Target: 5'- aGAGCGGCCAUCGCUcgGUgGCGGgGGCg -3' miRNA: 3'- -CUUGUUGGUGGCGG--CGgCGUCgUCGg -5' |
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11865 | 3' | -58.8 | NC_003266.2 | + | 16965 | 0.71 | 0.16875 |
Target: 5'- uGAACucCCGCUGCCGCCcugguGCGgagaguguaccgccGCGGCCg -3' miRNA: 3'- -CUUGuuGGUGGCGGCGG-----CGU--------------CGUCGG- -5' |
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11865 | 3' | -58.8 | NC_003266.2 | + | 10818 | 0.72 | 0.165516 |
Target: 5'- cAACAGCCGgcgcuucugccuCCGCC-CCaGCAGCAGCa -3' miRNA: 3'- cUUGUUGGU------------GGCGGcGG-CGUCGUCGg -5' |
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11865 | 3' | -58.8 | NC_003266.2 | + | 23353 | 0.72 | 0.152278 |
Target: 5'- -uGCccCCACCGCCGaCaagaaGCAGCAGCa -3' miRNA: 3'- cuUGuuGGUGGCGGC-Gg----CGUCGUCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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