miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11882 5' -51.8 NC_003266.2 + 16742 0.73 0.366012
Target:  5'- aGCccauCAcCAGCACCAugGaggUGCAGACg -3'
miRNA:   3'- gCGau--GUuGUCGUGGUugC---ACGUCUG- -5'
11882 5' -51.8 NC_003266.2 + 16926 0.7 0.520916
Target:  5'- uGCcGCggUAGC-CCGGCGUGgGGAUg -3'
miRNA:   3'- gCGaUGuuGUCGuGGUUGCACgUCUG- -5'
11882 5' -51.8 NC_003266.2 + 17566 0.7 0.509702
Target:  5'- gGCgUGgAACAGCACCAcaggGCAGGCg -3'
miRNA:   3'- gCG-AUgUUGUCGUGGUugcaCGUCUG- -5'
11882 5' -51.8 NC_003266.2 + 18063 0.68 0.636815
Target:  5'- gCGCgcggGCcACGGcCACCGGCG-GCAGGg -3'
miRNA:   3'- -GCGa---UGuUGUC-GUGGUUGCaCGUCUg -5'
11882 5' -51.8 NC_003266.2 + 18222 0.67 0.718226
Target:  5'- -----gGACAGCAgCGGCG-GCGGACa -3'
miRNA:   3'- gcgaugUUGUCGUgGUUGCaCGUCUG- -5'
11882 5' -51.8 NC_003266.2 + 19190 0.7 0.532224
Target:  5'- -aCUACAACAGCACUGGCaauauggggGUGCuGGCc -3'
miRNA:   3'- gcGAUGUUGUCGUGGUUG---------CACGuCUG- -5'
11882 5' -51.8 NC_003266.2 + 20124 0.67 0.718226
Target:  5'- uCGUUGC-GCAGCaugGCCucaAGCGUGgAGGCg -3'
miRNA:   3'- -GCGAUGuUGUCG---UGG---UUGCACgUCUG- -5'
11882 5' -51.8 NC_003266.2 + 22032 0.66 0.751931
Target:  5'- aCGCU-CGcCAGCACCGuaGCGUcGguGAUc -3'
miRNA:   3'- -GCGAuGUuGUCGUGGU--UGCA-CguCUG- -5'
11882 5' -51.8 NC_003266.2 + 22179 0.68 0.636815
Target:  5'- gGCUGCGugccCACCAugGgccgGCAGACc -3'
miRNA:   3'- gCGAUGUugucGUGGUugCa---CGUCUG- -5'
11882 5' -51.8 NC_003266.2 + 22400 0.67 0.67199
Target:  5'- aGCUggccaacaACGACGcGCGCUgcuGCGUGCAcGACg -3'
miRNA:   3'- gCGA--------UGUUGU-CGUGGu--UGCACGU-CUG- -5'
11882 5' -51.8 NC_003266.2 + 23657 0.67 0.695248
Target:  5'- gCGCUGCuuGACcGCACCGAgGUGCc--- -3'
miRNA:   3'- -GCGAUG--UUGuCGUGGUUgCACGucug -5'
11882 5' -51.8 NC_003266.2 + 24218 0.68 0.622714
Target:  5'- gCGCUugAugAGCACCugauccauaacCGUGCucauGACu -3'
miRNA:   3'- -GCGAugUugUCGUGGuu---------GCACGu---CUG- -5'
11882 5' -51.8 NC_003266.2 + 25067 0.66 0.751931
Target:  5'- gGUUGCAGCGGCAgUGGCacucgaGCAGGCc -3'
miRNA:   3'- gCGAUGUUGUCGUgGUUGca----CGUCUG- -5'
11882 5' -51.8 NC_003266.2 + 25116 0.72 0.434432
Target:  5'- uCGCU-CAGCAGCuggggguugcagGCCAgggagcggugcgGCGUGCAGAg -3'
miRNA:   3'- -GCGAuGUUGUCG------------UGGU------------UGCACGUCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.