Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11882 | 5' | -51.8 | NC_003266.2 | + | 3687 | 0.73 | 0.366012 |
Target: 5'- gCGCUggcggcagaaGCAGCAGCugCGGCG-GCAGcuGCg -3' miRNA: 3'- -GCGA----------UGUUGUCGugGUUGCaCGUC--UG- -5' |
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11882 | 5' | -51.8 | NC_003266.2 | + | 8082 | 0.69 | 0.566638 |
Target: 5'- aCG-UAguACAGCACCAGa-UGCAGGCg -3' miRNA: 3'- -GCgAUguUGUCGUGGUUgcACGUCUG- -5' |
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11882 | 5' | -51.8 | NC_003266.2 | + | 8190 | 0.66 | 0.756338 |
Target: 5'- aCGCUGCGgagucaggucaguggGCAGCGgCGGCGcGCGGu- -3' miRNA: 3'- -GCGAUGU---------------UGUCGUgGUUGCaCGUCug -5' |
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11882 | 5' | -51.8 | NC_003266.2 | + | 8466 | 0.66 | 0.729577 |
Target: 5'- gGC-ACGuCGGCGCCG-CGcGCGGGCa -3' miRNA: 3'- gCGaUGUuGUCGUGGUuGCaCGUCUG- -5' |
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11882 | 5' | -51.8 | NC_003266.2 | + | 8522 | 0.7 | 0.543619 |
Target: 5'- cCGCgc--GCGGCGCCGACGUGCc--- -3' miRNA: 3'- -GCGauguUGUCGUGGUUGCACGucug -5' |
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11882 | 5' | -51.8 | NC_003266.2 | + | 8914 | 0.68 | 0.656774 |
Target: 5'- aGUUGCAGaGGCGCUgguagagguaguugAGCGUGguGGCa -3' miRNA: 3'- gCGAUGUUgUCGUGG--------------UUGCACguCUG- -5' |
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11882 | 5' | -51.8 | NC_003266.2 | + | 10959 | 0.75 | 0.267003 |
Target: 5'- uCGCcGgAGCGGCACCcGCGgUGCAGAUg -3' miRNA: 3'- -GCGaUgUUGUCGUGGuUGC-ACGUCUG- -5' |
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11882 | 5' | -51.8 | NC_003266.2 | + | 11082 | 0.67 | 0.67199 |
Target: 5'- aCGCgggGCGGgAGCugCGGCGcgGCcuGGACa -3' miRNA: 3'- -GCGa--UGUUgUCGugGUUGCa-CG--UCUG- -5' |
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11882 | 5' | -51.8 | NC_003266.2 | + | 11479 | 0.69 | 0.566638 |
Target: 5'- -uCUGCAG-AGCAUCGugGUGCAGGa -3' miRNA: 3'- gcGAUGUUgUCGUGGUugCACGUCUg -5' |
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11882 | 5' | -51.8 | NC_003266.2 | + | 12260 | 1.1 | 0.001053 |
Target: 5'- cCGCUACAACAGCACCAACGUGCAGACc -3' miRNA: 3'- -GCGAUGUUGUCGUGGUUGCACGUCUG- -5' |
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11882 | 5' | -51.8 | NC_003266.2 | + | 12393 | 0.67 | 0.683647 |
Target: 5'- aGC-AC-GCAGCccGCCAACGUGCcccgGGGCc -3' miRNA: 3'- gCGaUGuUGUCG--UGGUUGCACG----UCUG- -5' |
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11882 | 5' | -51.8 | NC_003266.2 | + | 12699 | 0.72 | 0.434432 |
Target: 5'- aGCaGCAGCAGCAggcgcgaguUCGGCGUcaGCAGGCu -3' miRNA: 3'- gCGaUGUUGUCGU---------GGUUGCA--CGUCUG- -5' |
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11882 | 5' | -51.8 | NC_003266.2 | + | 13348 | 0.84 | 0.068962 |
Target: 5'- cCGCUGCGGCAGCACC--CGUGCGGcCg -3' miRNA: 3'- -GCGAUGUUGUCGUGGuuGCACGUCuG- -5' |
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11882 | 5' | -51.8 | NC_003266.2 | + | 13861 | 0.66 | 0.729577 |
Target: 5'- gGCaaugGCGGCGGCGgCGGCGaUGCAGcCc -3' miRNA: 3'- gCGa---UGUUGUCGUgGUUGC-ACGUCuG- -5' |
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11882 | 5' | -51.8 | NC_003266.2 | + | 14029 | 0.66 | 0.781206 |
Target: 5'- uCGCUgaacuaccagaacgACcACAGCaacuuucugaccACCGugGUGCAGAa -3' miRNA: 3'- -GCGA--------------UGuUGUCG------------UGGUugCACGUCUg -5' |
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11882 | 5' | -51.8 | NC_003266.2 | + | 14777 | 0.66 | 0.784384 |
Target: 5'- gCGCcGCAGCAGUGgCGGCG-GCcaAGGCu -3' miRNA: 3'- -GCGaUGUUGUCGUgGUUGCaCG--UCUG- -5' |
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11882 | 5' | -51.8 | NC_003266.2 | + | 15724 | 0.7 | 0.503023 |
Target: 5'- uCGCc-CGGCGGCACCGuagcaccaccgccauGCGUGCGGcGCg -3' miRNA: 3'- -GCGauGUUGUCGUGGU---------------UGCACGUC-UG- -5' |
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11882 | 5' | -51.8 | NC_003266.2 | + | 15824 | 0.7 | 0.532224 |
Target: 5'- aCGC-GCGGCuucaGGCGCCAGCGccgGCAGGa -3' miRNA: 3'- -GCGaUGUUG----UCGUGGUUGCa--CGUCUg -5' |
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11882 | 5' | -51.8 | NC_003266.2 | + | 16543 | 0.73 | 0.347875 |
Target: 5'- gCGCU-CGGCAGCACCuGC-UGCAGGg -3' miRNA: 3'- -GCGAuGUUGUCGUGGuUGcACGUCUg -5' |
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11882 | 5' | -51.8 | NC_003266.2 | + | 16616 | 0.66 | 0.762906 |
Target: 5'- gCGCUugGGCaccaucAGCugCAugGUGgGGuACa -3' miRNA: 3'- -GCGAugUUG------UCGugGUugCACgUC-UG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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