miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11882 5' -51.8 NC_003266.2 + 12260 1.1 0.001053
Target:  5'- cCGCUACAACAGCACCAACGUGCAGACc -3'
miRNA:   3'- -GCGAUGUUGUCGUGGUUGCACGUCUG- -5'
11882 5' -51.8 NC_003266.2 + 14777 0.66 0.784384
Target:  5'- gCGCcGCAGCAGUGgCGGCG-GCcaAGGCu -3'
miRNA:   3'- -GCGaUGUUGUCGUgGUUGCaCG--UCUG- -5'
11882 5' -51.8 NC_003266.2 + 14029 0.66 0.781206
Target:  5'- uCGCUgaacuaccagaacgACcACAGCaacuuucugaccACCGugGUGCAGAa -3'
miRNA:   3'- -GCGA--------------UGuUGUCG------------UGGUugCACGUCUg -5'
11882 5' -51.8 NC_003266.2 + 8190 0.66 0.756338
Target:  5'- aCGCUGCGgagucaggucaguggGCAGCGgCGGCGcGCGGu- -3'
miRNA:   3'- -GCGAUGU---------------UGUCGUgGUUGCaCGUCug -5'
11882 5' -51.8 NC_003266.2 + 22032 0.66 0.751931
Target:  5'- aCGCU-CGcCAGCACCGuaGCGUcGguGAUc -3'
miRNA:   3'- -GCGAuGUuGUCGUGGU--UGCA-CguCUG- -5'
11882 5' -51.8 NC_003266.2 + 13861 0.66 0.729577
Target:  5'- gGCaaugGCGGCGGCGgCGGCGaUGCAGcCc -3'
miRNA:   3'- gCGa---UGUUGUCGUgGUUGC-ACGUCuG- -5'
11882 5' -51.8 NC_003266.2 + 8466 0.66 0.729577
Target:  5'- gGC-ACGuCGGCGCCG-CGcGCGGGCa -3'
miRNA:   3'- gCGaUGUuGUCGUGGUuGCaCGUCUG- -5'
11882 5' -51.8 NC_003266.2 + 23657 0.67 0.695248
Target:  5'- gCGCUGCuuGACcGCACCGAgGUGCc--- -3'
miRNA:   3'- -GCGAUG--UUGuCGUGGUUgCACGucug -5'
11882 5' -51.8 NC_003266.2 + 12393 0.67 0.683647
Target:  5'- aGC-AC-GCAGCccGCCAACGUGCcccgGGGCc -3'
miRNA:   3'- gCGaUGuUGUCG--UGGUUGCACG----UCUG- -5'
11882 5' -51.8 NC_003266.2 + 11082 0.67 0.67199
Target:  5'- aCGCgggGCGGgAGCugCGGCGcgGCcuGGACa -3'
miRNA:   3'- -GCGa--UGUUgUCGugGUUGCa-CG--UCUG- -5'
11882 5' -51.8 NC_003266.2 + 8914 0.68 0.656774
Target:  5'- aGUUGCAGaGGCGCUgguagagguaguugAGCGUGguGGCa -3'
miRNA:   3'- gCGAUGUUgUCGUGG--------------UUGCACguCUG- -5'
11882 5' -51.8 NC_003266.2 + 10959 0.75 0.267003
Target:  5'- uCGCcGgAGCGGCACCcGCGgUGCAGAUg -3'
miRNA:   3'- -GCGaUgUUGUCGUGGuUGC-ACGUCUG- -5'
11882 5' -51.8 NC_003266.2 + 16742 0.73 0.366012
Target:  5'- aGCccauCAcCAGCACCAugGaggUGCAGACg -3'
miRNA:   3'- gCGau--GUuGUCGUGGUugC---ACGUCUG- -5'
11882 5' -51.8 NC_003266.2 + 15724 0.7 0.503023
Target:  5'- uCGCc-CGGCGGCACCGuagcaccaccgccauGCGUGCGGcGCg -3'
miRNA:   3'- -GCGauGUUGUCGUGGU---------------UGCACGUC-UG- -5'
11882 5' -51.8 NC_003266.2 + 17566 0.7 0.509702
Target:  5'- gGCgUGgAACAGCACCAcaggGCAGGCg -3'
miRNA:   3'- gCG-AUgUUGUCGUGGUugcaCGUCUG- -5'
11882 5' -51.8 NC_003266.2 + 15824 0.7 0.532224
Target:  5'- aCGC-GCGGCuucaGGCGCCAGCGccgGCAGGa -3'
miRNA:   3'- -GCGaUGUUG----UCGUGGUUGCa--CGUCUg -5'
11882 5' -51.8 NC_003266.2 + 19190 0.7 0.532224
Target:  5'- -aCUACAACAGCACUGGCaauauggggGUGCuGGCc -3'
miRNA:   3'- gcGAUGUUGUCGUGGUUG---------CACGuCUG- -5'
11882 5' -51.8 NC_003266.2 + 11479 0.69 0.566638
Target:  5'- -uCUGCAG-AGCAUCGugGUGCAGGa -3'
miRNA:   3'- gcGAUGUUgUCGUGGUugCACGUCUg -5'
11882 5' -51.8 NC_003266.2 + 16616 0.66 0.762906
Target:  5'- gCGCUugGGCaccaucAGCugCAugGUGgGGuACa -3'
miRNA:   3'- -GCGAugUUG------UCGugGUugCACgUC-UG- -5'
11882 5' -51.8 NC_003266.2 + 16543 0.73 0.347875
Target:  5'- gCGCU-CGGCAGCACCuGC-UGCAGGg -3'
miRNA:   3'- -GCGAuGUUGUCGUGGuUGcACGUCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.