Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11883 | 3' | -64.7 | NC_003266.2 | + | 12396 | 1.1 | 0.000064 |
Target: 5'- aCGCAGCCCGCCAACGUGCCCCGGGGCc -3' miRNA: 3'- -GCGUCGGGCGGUUGCACGGGGCCCCG- -5' |
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11883 | 3' | -64.7 | NC_003266.2 | + | 6600 | 0.74 | 0.051311 |
Target: 5'- uGCGGCauguaCGCCuccGCGcucacccaccccaUGCCCUGGGGCa -3' miRNA: 3'- gCGUCGg----GCGGu--UGC-------------ACGGGGCCCCG- -5' |
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11883 | 3' | -64.7 | NC_003266.2 | + | 12470 | 0.72 | 0.072034 |
Target: 5'- uGUAGUCCuCCug---GCCCCGGGGCa -3' miRNA: 3'- gCGUCGGGcGGuugcaCGGGGCCCCG- -5' |
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11883 | 3' | -64.7 | NC_003266.2 | + | 6493 | 0.72 | 0.076159 |
Target: 5'- gCGCGcGCUCGUagggacuaaggGGCGUGCCCCaGGGCa -3' miRNA: 3'- -GCGU-CGGGCGg----------UUGCACGGGGcCCCG- -5' |
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11883 | 3' | -64.7 | NC_003266.2 | + | 15884 | 0.71 | 0.080509 |
Target: 5'- aGCGGCCauaGCCAGCaUGUCCCGcccgcGGCg -3' miRNA: 3'- gCGUCGGg--CGGUUGcACGGGGCc----CCG- -5' |
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11883 | 3' | -64.7 | NC_003266.2 | + | 25225 | 0.7 | 0.103185 |
Target: 5'- gCGCaAGUagGCCGAgGUccacaGCCCCGGGGUg -3' miRNA: 3'- -GCG-UCGggCGGUUgCA-----CGGGGCCCCG- -5' |
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11883 | 3' | -64.7 | NC_003266.2 | + | 26411 | 0.7 | 0.106048 |
Target: 5'- aGUAGUCCugggcggcGCCGGCGgccagGCCCaucuGGGGCu -3' miRNA: 3'- gCGUCGGG--------CGGUUGCa----CGGGg---CCCCG- -5' |
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11883 | 3' | -64.7 | NC_003266.2 | + | 13884 | 0.69 | 0.114778 |
Target: 5'- uGCAGCCC-CCGcuggaggcuccuuACGUGCCaCCGcGGUa -3' miRNA: 3'- gCGUCGGGcGGU-------------UGCACGG-GGCcCCG- -5' |
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11883 | 3' | -64.7 | NC_003266.2 | + | 8993 | 0.69 | 0.115091 |
Target: 5'- aGCGGCauuuCGCUGACGUcGCCCa-GGGCu -3' miRNA: 3'- gCGUCGg---GCGGUUGCA-CGGGgcCCCG- -5' |
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11883 | 3' | -64.7 | NC_003266.2 | + | 16866 | 0.69 | 0.115091 |
Target: 5'- gGCuGGCCgCGCCGuACuUGCgCCGGGGUu -3' miRNA: 3'- gCG-UCGG-GCGGU-UGcACGgGGCCCCG- -5' |
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11883 | 3' | -64.7 | NC_003266.2 | + | 9346 | 0.69 | 0.118262 |
Target: 5'- uCGCAGCguaaagacgCCGCCGcgcaucuccAgGUGgCCCGGGGg -3' miRNA: 3'- -GCGUCG---------GGCGGU---------UgCACgGGGCCCCg -5' |
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11883 | 3' | -64.7 | NC_003266.2 | + | 11760 | 0.69 | 0.121514 |
Target: 5'- -aCAGCCUG-CAGCGgGCCcugaCCGGGGCc -3' miRNA: 3'- gcGUCGGGCgGUUGCaCGG----GGCCCCG- -5' |
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11883 | 3' | -64.7 | NC_003266.2 | + | 8416 | 0.68 | 0.13794 |
Target: 5'- cCGCuuccGCCCGCCAagaagaaacgggggACGguggucacuCCCCaGGGGCa -3' miRNA: 3'- -GCGu---CGGGCGGU--------------UGCac-------GGGG-CCCCG- -5' |
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11883 | 3' | -64.7 | NC_003266.2 | + | 21247 | 0.68 | 0.142832 |
Target: 5'- uCGCGGCCgGCCGuguugacgaugGCGcagGCCaccuugugCGGGGCc -3' miRNA: 3'- -GCGUCGGgCGGU-----------UGCa--CGGg-------GCCCCG- -5' |
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11883 | 3' | -64.7 | NC_003266.2 | + | 8518 | 0.68 | 0.149467 |
Target: 5'- gCGCGGC--GCCGACGUGCCCCuGccaccacugccuccGGGUc -3' miRNA: 3'- -GCGUCGggCGGUUGCACGGGG-C--------------CCCG- -5' |
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11883 | 3' | -64.7 | NC_003266.2 | + | 18014 | 0.68 | 0.15473 |
Target: 5'- cCGUGGCCCGC--GCGcGaCCgGGGGCu -3' miRNA: 3'- -GCGUCGGGCGguUGCaCgGGgCCCCG- -5' |
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11883 | 3' | -64.7 | NC_003266.2 | + | 22185 | 0.68 | 0.15473 |
Target: 5'- --aAGCCCGgCuGCGUGCCCaccauGGGCc -3' miRNA: 3'- gcgUCGGGCgGuUGCACGGGgc---CCCG- -5' |
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11883 | 3' | -64.7 | NC_003266.2 | + | 23550 | 0.68 | 0.158891 |
Target: 5'- uGCaAGCuCCuCCu-CGUGCUCCGcGGGCg -3' miRNA: 3'- gCG-UCG-GGcGGuuGCACGGGGC-CCCG- -5' |
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11883 | 3' | -64.7 | NC_003266.2 | + | 16286 | 0.67 | 0.163154 |
Target: 5'- aCGCAcuuuccGCCCgcGCCAcugcACGcGCCuCCGGGGg -3' miRNA: 3'- -GCGU------CGGG--CGGU----UGCaCGG-GGCCCCg -5' |
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11883 | 3' | -64.7 | NC_003266.2 | + | 14726 | 0.67 | 0.167519 |
Target: 5'- cCGCAGCcguagccaCCGCCucuacCGaGgUCCGGGGCg -3' miRNA: 3'- -GCGUCG--------GGCGGuu---GCaCgGGGCCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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