miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11883 3' -64.7 NC_003266.2 + 12396 1.1 0.000064
Target:  5'- aCGCAGCCCGCCAACGUGCCCCGGGGCc -3'
miRNA:   3'- -GCGUCGGGCGGUUGCACGGGGCCCCG- -5'
11883 3' -64.7 NC_003266.2 + 17003 0.66 0.206344
Target:  5'- cCGCGGCCgcgCGCCucuGACccUGCCgCGGGcGCg -3'
miRNA:   3'- -GCGUCGG---GCGG---UUGc-ACGGgGCCC-CG- -5'
11883 3' -64.7 NC_003266.2 + 3625 0.66 0.206344
Target:  5'- cCGCAGCugcugcuucugCCGCCAGCGccgugcgcggaaUGgCCauGGGCg -3'
miRNA:   3'- -GCGUCG-----------GGCGGUUGC------------ACgGGgcCCCG- -5'
11883 3' -64.7 NC_003266.2 + 8639 0.66 0.190449
Target:  5'- gGCGGCCUGCCGcagaaucucuugcACGUcgcccgaguuGUCCUGGuaGGCa -3'
miRNA:   3'- gCGUCGGGCGGU-------------UGCA----------CGGGGCC--CCG- -5'
11883 3' -64.7 NC_003266.2 + 15698 0.67 0.181247
Target:  5'- cCGC-GCCaagaGCCGGCGgcgGCgcaucgCCCGGcGGCa -3'
miRNA:   3'- -GCGuCGGg---CGGUUGCa--CG------GGGCC-CCG- -5'
11883 3' -64.7 NC_003266.2 + 10099 0.67 0.181247
Target:  5'- aGCGGCCauCGCUcgguGGCGgggGCgCCGGGcGCu -3'
miRNA:   3'- gCGUCGG--GCGG----UUGCa--CGgGGCCC-CG- -5'
11883 3' -64.7 NC_003266.2 + 4063 0.67 0.181247
Target:  5'- gGUAGCUCcauugcaggGCCu-CGUGCUCgGGGGUg -3'
miRNA:   3'- gCGUCGGG---------CGGuuGCACGGGgCCCCG- -5'
11883 3' -64.7 NC_003266.2 + 10344 0.67 0.171988
Target:  5'- aGCGGCUCGaCucCGUGgCCUGGaGGCu -3'
miRNA:   3'- gCGUCGGGCgGuuGCACgGGGCC-CCG- -5'
11883 3' -64.7 NC_003266.2 + 14726 0.67 0.167519
Target:  5'- cCGCAGCcguagccaCCGCCucuacCGaGgUCCGGGGCg -3'
miRNA:   3'- -GCGUCG--------GGCGGuu---GCaCgGGGCCCCG- -5'
11883 3' -64.7 NC_003266.2 + 29269 0.67 0.167519
Target:  5'- aGCGGCaUCGUCggUGUGCUuuGuGGGUu -3'
miRNA:   3'- gCGUCG-GGCGGuuGCACGGggC-CCCG- -5'
11883 3' -64.7 NC_003266.2 + 6493 0.72 0.076159
Target:  5'- gCGCGcGCUCGUagggacuaaggGGCGUGCCCCaGGGCa -3'
miRNA:   3'- -GCGU-CGGGCGg----------UUGCACGGGGcCCCG- -5'
11883 3' -64.7 NC_003266.2 + 15884 0.71 0.080509
Target:  5'- aGCGGCCauaGCCAGCaUGUCCCGcccgcGGCg -3'
miRNA:   3'- gCGUCGGg--CGGUUGcACGGGGCc----CCG- -5'
11883 3' -64.7 NC_003266.2 + 13884 0.69 0.114778
Target:  5'- uGCAGCCC-CCGcuggaggcuccuuACGUGCCaCCGcGGUa -3'
miRNA:   3'- gCGUCGGGcGGU-------------UGCACGG-GGCcCCG- -5'
11883 3' -64.7 NC_003266.2 + 8993 0.69 0.115091
Target:  5'- aGCGGCauuuCGCUGACGUcGCCCa-GGGCu -3'
miRNA:   3'- gCGUCGg---GCGGUUGCA-CGGGgcCCCG- -5'
11883 3' -64.7 NC_003266.2 + 9346 0.69 0.118262
Target:  5'- uCGCAGCguaaagacgCCGCCGcgcaucuccAgGUGgCCCGGGGg -3'
miRNA:   3'- -GCGUCG---------GGCGGU---------UgCACgGGGCCCCg -5'
11883 3' -64.7 NC_003266.2 + 11760 0.69 0.121514
Target:  5'- -aCAGCCUG-CAGCGgGCCcugaCCGGGGCc -3'
miRNA:   3'- gcGUCGGGCgGUUGCaCGG----GGCCCCG- -5'
11883 3' -64.7 NC_003266.2 + 18014 0.68 0.15473
Target:  5'- cCGUGGCCCGC--GCGcGaCCgGGGGCu -3'
miRNA:   3'- -GCGUCGGGCGguUGCaCgGGgCCCCG- -5'
11883 3' -64.7 NC_003266.2 + 31580 0.66 0.216643
Target:  5'- uGCAGCCCGCCGGgGccUGCaguaCCagagcugggaagaGGGGa -3'
miRNA:   3'- gCGUCGGGCGGUUgC--ACGg---GG-------------CCCCg -5'
11883 3' -64.7 NC_003266.2 + 12470 0.72 0.072034
Target:  5'- uGUAGUCCuCCug---GCCCCGGGGCa -3'
miRNA:   3'- gCGUCGGGcGGuugcaCGGGGCCCCG- -5'
11883 3' -64.7 NC_003266.2 + 25225 0.7 0.103185
Target:  5'- gCGCaAGUagGCCGAgGUccacaGCCCCGGGGUg -3'
miRNA:   3'- -GCG-UCGggCGGUUgCA-----CGGGGCCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.