Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11894 | 3' | -53.9 | NC_003266.2 | + | 16969 | 0.66 | 0.702464 |
Target: 5'- cUCCC----GCUGCCGCCcUggUGCGGa -3' miRNA: 3'- -AGGGaaguUGGUGGUGGcGuuACGCC- -5' |
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11894 | 3' | -53.9 | NC_003266.2 | + | 22991 | 0.66 | 0.691237 |
Target: 5'- --gCUUCAGCUACCcCC-CcGUGCGGa -3' miRNA: 3'- aggGAAGUUGGUGGuGGcGuUACGCC- -5' |
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11894 | 3' | -53.9 | NC_003266.2 | + | 15935 | 0.66 | 0.691237 |
Target: 5'- gCgCgac-GCCGCCACCGguGUGCGc -3' miRNA: 3'- aGgGaaguUGGUGGUGGCguUACGCc -5' |
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11894 | 3' | -53.9 | NC_003266.2 | + | 9274 | 0.66 | 0.668612 |
Target: 5'- cCCCUcccCcGCCACCACCGCc-UGaGGa -3' miRNA: 3'- aGGGAa--GuUGGUGGUGGCGuuACgCC- -5' |
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11894 | 3' | -53.9 | NC_003266.2 | + | 15819 | 0.66 | 0.668612 |
Target: 5'- gCCCUgcgCAGCaaggcucgCGCCGCaCGCAugGCGGu -3' miRNA: 3'- aGGGAa--GUUG--------GUGGUG-GCGUuaCGCC- -5' |
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11894 | 3' | -53.9 | NC_003266.2 | + | 8502 | 0.66 | 0.657238 |
Target: 5'- cCCCU---GCCACCACUGCcuc-CGGg -3' miRNA: 3'- aGGGAaguUGGUGGUGGCGuuacGCC- -5' |
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11894 | 3' | -53.9 | NC_003266.2 | + | 17244 | 0.66 | 0.645839 |
Target: 5'- cCCCaUC-AUCGCCGCgGCGAU-CGGg -3' miRNA: 3'- aGGGaAGuUGGUGGUGgCGUUAcGCC- -5' |
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11894 | 3' | -53.9 | NC_003266.2 | + | 17338 | 0.66 | 0.645839 |
Target: 5'- -gCCUgc-ACCGCCACggaaGCAAUGcCGGg -3' miRNA: 3'- agGGAaguUGGUGGUGg---CGUUAC-GCC- -5' |
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11894 | 3' | -53.9 | NC_003266.2 | + | 24850 | 0.67 | 0.634427 |
Target: 5'- aUCCUgcCGGCCACCugcuCCGCGcUGCc- -3' miRNA: 3'- -AGGGaaGUUGGUGGu---GGCGUuACGcc -5' |
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11894 | 3' | -53.9 | NC_003266.2 | + | 13358 | 0.67 | 0.611607 |
Target: 5'- -gCC-UCGGgCACCGCUGCGgcagcacccGUGCGGc -3' miRNA: 3'- agGGaAGUUgGUGGUGGCGU---------UACGCC- -5' |
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11894 | 3' | -53.9 | NC_003266.2 | + | 10131 | 0.67 | 0.599083 |
Target: 5'- -aCCgcCAGCCGCCGCCGCAcuuccucAU-CGGc -3' miRNA: 3'- agGGaaGUUGGUGGUGGCGU-------UAcGCC- -5' |
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11894 | 3' | -53.9 | NC_003266.2 | + | 8278 | 0.67 | 0.588863 |
Target: 5'- cUCCUgcaagUCAACCGCgCGCCGCcgcUGCc- -3' miRNA: 3'- -AGGGa----AGUUGGUG-GUGGCGuu-ACGcc -5' |
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11894 | 3' | -53.9 | NC_003266.2 | + | 23130 | 0.67 | 0.588863 |
Target: 5'- cCCCUcgccUCAggaacaaccACCGCCGCCGCA--GCa- -3' miRNA: 3'- aGGGA----AGU---------UGGUGGUGGCGUuaCGcc -5' |
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11894 | 3' | -53.9 | NC_003266.2 | + | 12035 | 0.68 | 0.566274 |
Target: 5'- gCUCUgCAG-CGCCGcCCGCAuUGCGGg -3' miRNA: 3'- aGGGAaGUUgGUGGU-GGCGUuACGCC- -5' |
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11894 | 3' | -53.9 | NC_003266.2 | + | 3634 | 0.68 | 0.532843 |
Target: 5'- cUgCUUCuGCCGCCAgCGCcGUGCGcGg -3' miRNA: 3'- aGgGAAGuUGGUGGUgGCGuUACGC-C- -5' |
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11894 | 3' | -53.9 | NC_003266.2 | + | 20102 | 0.69 | 0.521852 |
Target: 5'- aUCCUUCAACgACUACCuCucgGCGGc -3' miRNA: 3'- aGGGAAGUUGgUGGUGGcGuuaCGCC- -5' |
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11894 | 3' | -53.9 | NC_003266.2 | + | 27175 | 0.69 | 0.510951 |
Target: 5'- cCCCUUCGACgACgAuCCGCAcuccGUGGg -3' miRNA: 3'- aGGGAAGUUGgUGgU-GGCGUua--CGCC- -5' |
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11894 | 3' | -53.9 | NC_003266.2 | + | 10204 | 0.69 | 0.500145 |
Target: 5'- -aUCUaCGGCUACCACCGCAccAUGCu- -3' miRNA: 3'- agGGAaGUUGGUGGUGGCGU--UACGcc -5' |
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11894 | 3' | -53.9 | NC_003266.2 | + | 17305 | 0.69 | 0.489442 |
Target: 5'- gCCC--CGAUCGCCGCgGCGAUGaUGGg -3' miRNA: 3'- aGGGaaGUUGGUGGUGgCGUUAC-GCC- -5' |
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11894 | 3' | -53.9 | NC_003266.2 | + | 19964 | 0.7 | 0.458003 |
Target: 5'- uUCCCUuggCAACgACCugCGCAcaGaCGGg -3' miRNA: 3'- -AGGGAa--GUUGgUGGugGCGUuaC-GCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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