Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11894 | 3' | -53.9 | NC_003266.2 | + | 19778 | 1.12 | 0.000487 |
Target: 5'- aUCCCUUCAACCACCACCGCAAUGCGGg -3' miRNA: 3'- -AGGGAAGUUGGUGGUGGCGUUACGCC- -5' |
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11894 | 3' | -53.9 | NC_003266.2 | + | 16969 | 0.66 | 0.702464 |
Target: 5'- cUCCC----GCUGCCGCCcUggUGCGGa -3' miRNA: 3'- -AGGGaaguUGGUGGUGGcGuuACGCC- -5' |
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11894 | 3' | -53.9 | NC_003266.2 | + | 15935 | 0.66 | 0.691237 |
Target: 5'- gCgCgac-GCCGCCACCGguGUGCGc -3' miRNA: 3'- aGgGaaguUGGUGGUGGCguUACGCc -5' |
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11894 | 3' | -53.9 | NC_003266.2 | + | 17244 | 0.66 | 0.645839 |
Target: 5'- cCCCaUC-AUCGCCGCgGCGAU-CGGg -3' miRNA: 3'- aGGGaAGuUGGUGGUGgCGUUAcGCC- -5' |
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11894 | 3' | -53.9 | NC_003266.2 | + | 24850 | 0.67 | 0.634427 |
Target: 5'- aUCCUgcCGGCCACCugcuCCGCGcUGCc- -3' miRNA: 3'- -AGGGaaGUUGGUGGu---GGCGUuACGcc -5' |
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11894 | 3' | -53.9 | NC_003266.2 | + | 3634 | 0.68 | 0.532843 |
Target: 5'- cUgCUUCuGCCGCCAgCGCcGUGCGcGg -3' miRNA: 3'- aGgGAAGuUGGUGGUgGCGuUACGC-C- -5' |
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11894 | 3' | -53.9 | NC_003266.2 | + | 20102 | 0.69 | 0.521852 |
Target: 5'- aUCCUUCAACgACUACCuCucgGCGGc -3' miRNA: 3'- aGGGAAGUUGgUGGUGGcGuuaCGCC- -5' |
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11894 | 3' | -53.9 | NC_003266.2 | + | 19964 | 0.7 | 0.458003 |
Target: 5'- uUCCCUuggCAACgACCugCGCAcaGaCGGg -3' miRNA: 3'- -AGGGAa--GUUGgUGGugGCGUuaC-GCC- -5' |
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11894 | 3' | -53.9 | NC_003266.2 | + | 10856 | 0.7 | 0.458003 |
Target: 5'- -aCUUcCAGCCACUACCGCc--GCGGc -3' miRNA: 3'- agGGAaGUUGGUGGUGGCGuuaCGCC- -5' |
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11894 | 3' | -53.9 | NC_003266.2 | + | 18386 | 0.7 | 0.437654 |
Target: 5'- aCCCacgaugUGACCACCgACCGCAGccaGCGGc -3' miRNA: 3'- aGGGaa----GUUGGUGG-UGGCGUUa--CGCC- -5' |
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11894 | 3' | -53.9 | NC_003266.2 | + | 15726 | 0.71 | 0.38822 |
Target: 5'- gCCCggCGGCaccguagCACCACCGCcaugcGUGCGGc -3' miRNA: 3'- aGGGaaGUUG-------GUGGUGGCGu----UACGCC- -5' |
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11894 | 3' | -53.9 | NC_003266.2 | + | 27175 | 0.69 | 0.510951 |
Target: 5'- cCCCUUCGACgACgAuCCGCAcuccGUGGg -3' miRNA: 3'- aGGGAAGUUGgUGgU-GGCGUua--CGCC- -5' |
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11894 | 3' | -53.9 | NC_003266.2 | + | 10204 | 0.69 | 0.500145 |
Target: 5'- -aUCUaCGGCUACCACCGCAccAUGCu- -3' miRNA: 3'- agGGAaGUUGGUGGUGGCGU--UACGcc -5' |
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11894 | 3' | -53.9 | NC_003266.2 | + | 17305 | 0.69 | 0.489442 |
Target: 5'- gCCC--CGAUCGCCGCgGCGAUGaUGGg -3' miRNA: 3'- aGGGaaGUUGGUGGUGgCGUUAC-GCC- -5' |
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11894 | 3' | -53.9 | NC_003266.2 | + | 17259 | 0.7 | 0.451844 |
Target: 5'- cUCCCccCAACCgcuugcugauggcgcGCCGCCGCcGGUGgGGg -3' miRNA: 3'- -AGGGaaGUUGG---------------UGGUGGCG-UUACgCC- -5' |
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11894 | 3' | -53.9 | NC_003266.2 | + | 14839 | 0.71 | 0.39857 |
Target: 5'- -gCCUUgGccGCCGCCACUGC--UGCGGc -3' miRNA: 3'- agGGAAgU--UGGUGGUGGCGuuACGCC- -5' |
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11894 | 3' | -53.9 | NC_003266.2 | + | 10255 | 0.71 | 0.370765 |
Target: 5'- uUCCCUcgcgccUCcACCACCGCCGCcg-GCa- -3' miRNA: 3'- -AGGGA------AGuUGGUGGUGGCGuuaCGcc -5' |
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11894 | 3' | -53.9 | NC_003266.2 | + | 26019 | 0.72 | 0.352978 |
Target: 5'- gUCCaCUgCcGCCGCCGCCGC--UGUGGa -3' miRNA: 3'- -AGG-GAaGuUGGUGGUGGCGuuACGCC- -5' |
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11894 | 3' | -53.9 | NC_003266.2 | + | 4840 | 0.72 | 0.319246 |
Target: 5'- cUCCC-UCAACUACCACCuGCAGccggucauUGgGGu -3' miRNA: 3'- -AGGGaAGUUGGUGGUGG-CGUU--------ACgCC- -5' |
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11894 | 3' | -53.9 | NC_003266.2 | + | 22991 | 0.66 | 0.691237 |
Target: 5'- --gCUUCAGCUACCcCC-CcGUGCGGa -3' miRNA: 3'- aggGAAGUUGGUGGuGGcGuUACGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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