miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11894 3' -53.9 NC_003266.2 + 23130 0.67 0.588863
Target:  5'- cCCCUcgccUCAggaacaaccACCGCCGCCGCA--GCa- -3'
miRNA:   3'- aGGGA----AGU---------UGGUGGUGGCGUuaCGcc -5'
11894 3' -53.9 NC_003266.2 + 4840 0.72 0.319246
Target:  5'- cUCCC-UCAACUACCACCuGCAGccggucauUGgGGu -3'
miRNA:   3'- -AGGGaAGUUGGUGGUGG-CGUU--------ACgCC- -5'
11894 3' -53.9 NC_003266.2 + 26019 0.72 0.352978
Target:  5'- gUCCaCUgCcGCCGCCGCCGC--UGUGGa -3'
miRNA:   3'- -AGG-GAaGuUGGUGGUGGCGuuACGCC- -5'
11894 3' -53.9 NC_003266.2 + 10255 0.71 0.370765
Target:  5'- uUCCCUcgcgccUCcACCACCGCCGCcg-GCa- -3'
miRNA:   3'- -AGGGA------AGuUGGUGGUGGCGuuaCGcc -5'
11894 3' -53.9 NC_003266.2 + 14839 0.71 0.39857
Target:  5'- -gCCUUgGccGCCGCCACUGC--UGCGGc -3'
miRNA:   3'- agGGAAgU--UGGUGGUGGCGuuACGCC- -5'
11894 3' -53.9 NC_003266.2 + 17259 0.7 0.451844
Target:  5'- cUCCCccCAACCgcuugcugauggcgcGCCGCCGCcGGUGgGGg -3'
miRNA:   3'- -AGGGaaGUUGG---------------UGGUGGCG-UUACgCC- -5'
11894 3' -53.9 NC_003266.2 + 17305 0.69 0.489442
Target:  5'- gCCC--CGAUCGCCGCgGCGAUGaUGGg -3'
miRNA:   3'- aGGGaaGUUGGUGGUGgCGUUAC-GCC- -5'
11894 3' -53.9 NC_003266.2 + 10204 0.69 0.500145
Target:  5'- -aUCUaCGGCUACCACCGCAccAUGCu- -3'
miRNA:   3'- agGGAaGUUGGUGGUGGCGU--UACGcc -5'
11894 3' -53.9 NC_003266.2 + 27175 0.69 0.510951
Target:  5'- cCCCUUCGACgACgAuCCGCAcuccGUGGg -3'
miRNA:   3'- aGGGAAGUUGgUGgU-GGCGUua--CGCC- -5'
11894 3' -53.9 NC_003266.2 + 16154 0.77 0.166908
Target:  5'- aUCCUUC-ACCGCCGCCGCGggGCc- -3'
miRNA:   3'- aGGGAAGuUGGUGGUGGCGUuaCGcc -5'
11894 3' -53.9 NC_003266.2 + 9274 0.66 0.668612
Target:  5'- cCCCUcccCcGCCACCACCGCc-UGaGGa -3'
miRNA:   3'- aGGGAa--GuUGGUGGUGGCGuuACgCC- -5'
11894 3' -53.9 NC_003266.2 + 15819 0.66 0.668612
Target:  5'- gCCCUgcgCAGCaaggcucgCGCCGCaCGCAugGCGGu -3'
miRNA:   3'- aGGGAa--GUUG--------GUGGUG-GCGUuaCGCC- -5'
11894 3' -53.9 NC_003266.2 + 8278 0.67 0.588863
Target:  5'- cUCCUgcaagUCAACCGCgCGCCGCcgcUGCc- -3'
miRNA:   3'- -AGGGa----AGUUGGUG-GUGGCGuu-ACGcc -5'
11894 3' -53.9 NC_003266.2 + 22991 0.66 0.691237
Target:  5'- --gCUUCAGCUACCcCC-CcGUGCGGa -3'
miRNA:   3'- aggGAAGUUGGUGGuGGcGuUACGCC- -5'
11894 3' -53.9 NC_003266.2 + 10131 0.67 0.599083
Target:  5'- -aCCgcCAGCCGCCGCCGCAcuuccucAU-CGGc -3'
miRNA:   3'- agGGaaGUUGGUGGUGGCGU-------UAcGCC- -5'
11894 3' -53.9 NC_003266.2 + 8502 0.66 0.657238
Target:  5'- cCCCU---GCCACCACUGCcuc-CGGg -3'
miRNA:   3'- aGGGAaguUGGUGGUGGCGuuacGCC- -5'
11894 3' -53.9 NC_003266.2 + 13358 0.67 0.611607
Target:  5'- -gCC-UCGGgCACCGCUGCGgcagcacccGUGCGGc -3'
miRNA:   3'- agGGaAGUUgGUGGUGGCGU---------UACGCC- -5'
11894 3' -53.9 NC_003266.2 + 17338 0.66 0.645839
Target:  5'- -gCCUgc-ACCGCCACggaaGCAAUGcCGGg -3'
miRNA:   3'- agGGAaguUGGUGGUGg---CGUUAC-GCC- -5'
11894 3' -53.9 NC_003266.2 + 12035 0.68 0.566274
Target:  5'- gCUCUgCAG-CGCCGcCCGCAuUGCGGg -3'
miRNA:   3'- aGGGAaGUUgGUGGU-GGCGUuACGCC- -5'
11894 3' -53.9 NC_003266.2 + 20102 0.69 0.521852
Target:  5'- aUCCUUCAACgACUACCuCucgGCGGc -3'
miRNA:   3'- aGGGAAGUUGgUGGUGGcGuuaCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.