miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11898 5' -55.7 NC_003266.2 + 20503 0.66 0.542708
Target:  5'- ---cUUGGUCAuGUUGCacuggGCCACGUUGUa -3'
miRNA:   3'- caacAACCGGU-CGACG-----UGGUGCGACG- -5'
11898 5' -55.7 NC_003266.2 + 3810 0.66 0.528217
Target:  5'- ----gUGGCuCAGCUGCaggagcagacgcggGCCGCgGUUGCc -3'
miRNA:   3'- caacaACCG-GUCGACG--------------UGGUG-CGACG- -5'
11898 5' -55.7 NC_003266.2 + 22581 0.66 0.505123
Target:  5'- -cUG-UGGCUgcacGGCUGUACCGaagucgagggcaaGCUGCg -3'
miRNA:   3'- caACaACCGG----UCGACGUGGUg------------CGACG- -5'
11898 5' -55.7 NC_003266.2 + 21401 0.66 0.498604
Target:  5'- cUUGgUGGCCAGg-GCGCUgcgGCGCaGCa -3'
miRNA:   3'- cAACaACCGGUCgaCGUGG---UGCGaCG- -5'
11898 5' -55.7 NC_003266.2 + 23749 0.66 0.498604
Target:  5'- --cGUaGGCgCGGCUGagcuccuCCACGCUGa -3'
miRNA:   3'- caaCAaCCG-GUCGACgu-----GGUGCGACg -5'
11898 5' -55.7 NC_003266.2 + 24513 0.67 0.477154
Target:  5'- --gGUUGGUCAGCU---CCACGUUGg -3'
miRNA:   3'- caaCAACCGGUCGAcguGGUGCGACg -5'
11898 5' -55.7 NC_003266.2 + 11443 0.67 0.466602
Target:  5'- --cGUUGuCCcgacuguGCUGCACCACcaggaacaGCUGCg -3'
miRNA:   3'- caaCAACcGGu------CGACGUGGUG--------CGACG- -5'
11898 5' -55.7 NC_003266.2 + 9755 0.67 0.435694
Target:  5'- ----cUGGCCAGgUGUcaggACCACGCcugggGCa -3'
miRNA:   3'- caacaACCGGUCgACG----UGGUGCGa----CG- -5'
11898 5' -55.7 NC_003266.2 + 11236 0.68 0.415759
Target:  5'- --gGUUGGCCgcGGCcacgUGCGCgCGCGCaggGCu -3'
miRNA:   3'- caaCAACCGG--UCG----ACGUG-GUGCGa--CG- -5'
11898 5' -55.7 NC_003266.2 + 33820 0.69 0.359447
Target:  5'- -aUGUUGGCaCAGCacagGCA-CACGCUcauGCa -3'
miRNA:   3'- caACAACCG-GUCGa---CGUgGUGCGA---CG- -5'
11898 5' -55.7 NC_003266.2 + 26608 0.69 0.359447
Target:  5'- -gUGUccagcUGGCgGGCgGCGCCACcCUGUg -3'
miRNA:   3'- caACA-----ACCGgUCGaCGUGGUGcGACG- -5'
11898 5' -55.7 NC_003266.2 + 16823 0.69 0.358554
Target:  5'- -----cGGCCAGcCUGCugauGCCcaacuacGCGCUGCa -3'
miRNA:   3'- caacaaCCGGUC-GACG----UGG-------UGCGACG- -5'
11898 5' -55.7 NC_003266.2 + 3604 0.69 0.341898
Target:  5'- --cGUcggUGGaCgCAGCUGcCGCCGCaGCUGCu -3'
miRNA:   3'- caaCA---ACC-G-GUCGAC-GUGGUG-CGACG- -5'
11898 5' -55.7 NC_003266.2 + 14961 0.71 0.24978
Target:  5'- aGUUGUaGGCCAG--GUACCA-GCUGCg -3'
miRNA:   3'- -CAACAaCCGGUCgaCGUGGUgCGACG- -5'
11898 5' -55.7 NC_003266.2 + 24853 0.74 0.155327
Target:  5'- -cUGccGGCCAcCUGCuCCGCGCUGCc -3'
miRNA:   3'- caACaaCCGGUcGACGuGGUGCGACG- -5'
11898 5' -55.7 NC_003266.2 + 22351 1.12 0.000222
Target:  5'- cGUUGUUGGCCAGCUGCACCACGCUGCg -3'
miRNA:   3'- -CAACAACCGGUCGACGUGGUGCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.