Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11900 | 3' | -56.6 | NC_003266.2 | + | 5095 | 0.66 | 0.490723 |
Target: 5'- aGA-CGAuGGGCGUCcagcGCGGCcAGGGUc -3' miRNA: 3'- aCUaGCU-CCUGCAGu---CGUCGcUCCCG- -5' |
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11900 | 3' | -56.6 | NC_003266.2 | + | 5373 | 0.66 | 0.490723 |
Target: 5'- gGAcUUGAGGGCGUagAGCu-UGGGGGCg -3' miRNA: 3'- aCU-AGCUCCUGCAg-UCGucGCUCCCG- -5' |
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11900 | 3' | -56.6 | NC_003266.2 | + | 5409 | 0.66 | 0.501265 |
Target: 5'- gGAcUCGGGGGCGUaGGCGuccGCGccgcaguGGGCg -3' miRNA: 3'- aCU-AGCUCCUGCAgUCGU---CGCu------CCCG- -5' |
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11900 | 3' | -56.6 | NC_003266.2 | + | 6382 | 0.69 | 0.347442 |
Target: 5'- -cGUCGGGGGgGUCAGCAuCGAuGGUg -3' miRNA: 3'- acUAGCUCCUgCAGUCGUcGCUcCCG- -5' |
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11900 | 3' | -56.6 | NC_003266.2 | + | 6861 | 0.67 | 0.480285 |
Target: 5'- gUGA-CGAGGACGUCcagggcGCAGUagucaAGGGUc -3' miRNA: 3'- -ACUaGCUCCUGCAGu-----CGUCGc----UCCCG- -5' |
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11900 | 3' | -56.6 | NC_003266.2 | + | 7097 | 0.67 | 0.469957 |
Target: 5'- uUGcgCaGGGAgGUguGC-GUGAGGGCg -3' miRNA: 3'- -ACuaGcUCCUgCAguCGuCGCUCCCG- -5' |
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11900 | 3' | -56.6 | NC_003266.2 | + | 7477 | 0.69 | 0.35602 |
Target: 5'- cUGcUCGAGGGCccaGUCGGCgAGaUGGGGGUu -3' miRNA: 3'- -ACuAGCUCCUG---CAGUCG-UC-GCUCCCG- -5' |
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11900 | 3' | -56.6 | NC_003266.2 | + | 8406 | 0.68 | 0.401099 |
Target: 5'- cGG-CGAGGACGcgCgccgGGCGGUaGGGGCg -3' miRNA: 3'- aCUaGCUCCUGCa-G----UCGUCGcUCCCG- -5' |
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11900 | 3' | -56.6 | NC_003266.2 | + | 8455 | 0.69 | 0.347442 |
Target: 5'- gUGGUggcaGGGGcACGUCGGCGccgcGCGcGGGCa -3' miRNA: 3'- -ACUAg---CUCC-UGCAGUCGU----CGCuCCCG- -5' |
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11900 | 3' | -56.6 | NC_003266.2 | + | 9232 | 0.66 | 0.490723 |
Target: 5'- gGGagGGGGccuGCGUCgccGGCGGCGcacGGGCa -3' miRNA: 3'- aCUagCUCC---UGCAG---UCGUCGCu--CCCG- -5' |
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11900 | 3' | -56.6 | NC_003266.2 | + | 10093 | 0.68 | 0.410542 |
Target: 5'- cGGUaGAGcGGCcaucgcUCGGUGGCGGGGGCg -3' miRNA: 3'- aCUAgCUC-CUGc-----AGUCGUCGCUCCCG- -5' |
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11900 | 3' | -56.6 | NC_003266.2 | + | 15012 | 0.73 | 0.206898 |
Target: 5'- ---cCGAGGugGUgAGCAGCGuccAGGaGCg -3' miRNA: 3'- acuaGCUCCugCAgUCGUCGC---UCC-CG- -5' |
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11900 | 3' | -56.6 | NC_003266.2 | + | 15686 | 0.77 | 0.099507 |
Target: 5'- cGGUgGAgacGGGCG-CGGCGGCGGGGGUg -3' miRNA: 3'- aCUAgCU---CCUGCaGUCGUCGCUCCCG- -5' |
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11900 | 3' | -56.6 | NC_003266.2 | + | 16217 | 0.68 | 0.429834 |
Target: 5'- ----gGAGGcGCGUgCAGUGGCGcGGGCg -3' miRNA: 3'- acuagCUCC-UGCA-GUCGUCGCuCCCG- -5' |
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11900 | 3' | -56.6 | NC_003266.2 | + | 16516 | 0.66 | 0.533455 |
Target: 5'- -cGUCGGGGcuugaAGC-GCGAGGGCg -3' miRNA: 3'- acUAGCUCCugcagUCGuCGCUCCCG- -5' |
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11900 | 3' | -56.6 | NC_003266.2 | + | 16903 | 0.66 | 0.522637 |
Target: 5'- aUGAUgGaAGGAUG-CAGC-GCGuaguuGGGCa -3' miRNA: 3'- -ACUAgC-UCCUGCaGUCGuCGCu----CCCG- -5' |
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11900 | 3' | -56.6 | NC_003266.2 | + | 21838 | 0.68 | 0.420121 |
Target: 5'- uUGAacUCGGGGAUcagcaguuUCGGCAGC-AGGGUg -3' miRNA: 3'- -ACU--AGCUCCUGc-------AGUCGUCGcUCCCG- -5' |
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11900 | 3' | -56.6 | NC_003266.2 | + | 22503 | 0.7 | 0.299116 |
Target: 5'- aUGAUCGAgauGGAUGU-GGCaAGCGAgaacGGGCa -3' miRNA: 3'- -ACUAGCU---CCUGCAgUCG-UCGCU----CCCG- -5' |
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11900 | 3' | -56.6 | NC_003266.2 | + | 23054 | 0.67 | 0.459744 |
Target: 5'- ---cUGcAGGACGUCAGCcaggacAGCGAGGa- -3' miRNA: 3'- acuaGC-UCCUGCAGUCG------UCGCUCCcg -5' |
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11900 | 3' | -56.6 | NC_003266.2 | + | 23458 | 0.66 | 0.522637 |
Target: 5'- aGGUgGcGGGGC-UgGGCGGCG-GGGCg -3' miRNA: 3'- aCUAgC-UCCUGcAgUCGUCGCuCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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