miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11900 5' -58.2 NC_003266.2 + 6399 0.66 0.39439
Target:  5'- cUGCCccccuuCUGCuCGCgcaaggGCGgccGCCUCUGCu -3'
miRNA:   3'- cACGGu-----GACG-GCGa-----CGU---UGGAGACGu -5'
11900 5' -58.2 NC_003266.2 + 30364 0.66 0.370435
Target:  5'- uUGCCuucaucaccugcauCUGCUGCUGUAGCauagUCUGCc -3'
miRNA:   3'- cACGGu-------------GACGGCGACGUUGg---AGACGu -5'
11900 5' -58.2 NC_003266.2 + 22589 0.66 0.366839
Target:  5'- gGUGCgCGCUGUgGCUGCAcggcuguACCgaagucgagggcaagCUGCGg -3'
miRNA:   3'- -CACG-GUGACGgCGACGU-------UGGa--------------GACGU- -5'
11900 5' -58.2 NC_003266.2 + 14828 0.67 0.344055
Target:  5'- -cGCCACUGCUGCggcgcuaGCAaaauuaucgccccggACCUCgGUAg -3'
miRNA:   3'- caCGGUGACGGCGa------CGU---------------UGGAGaCGU- -5'
11900 5' -58.2 NC_003266.2 + 15925 0.68 0.300054
Target:  5'- -gGCCGCUGCCGCcGCcguGGCCgc-GCGu -3'
miRNA:   3'- caCGGUGACGGCGaCG---UUGGagaCGU- -5'
11900 5' -58.2 NC_003266.2 + 24908 0.68 0.300053
Target:  5'- aGUGCCcCccGCCGCUGUggAGCCaCUGCu -3'
miRNA:   3'- -CACGGuGa-CGGCGACG--UUGGaGACGu -5'
11900 5' -58.2 NC_003266.2 + 28667 0.68 0.284897
Target:  5'- -aGaCCACUgcgcuguguggGCCGCUGauuACCUUUGCAa -3'
miRNA:   3'- caC-GGUGA-----------CGGCGACgu-UGGAGACGU- -5'
11900 5' -58.2 NC_003266.2 + 17001 0.69 0.230299
Target:  5'- -cGCCGCgGCCGC-GCG-CCUCUGa- -3'
miRNA:   3'- caCGGUGaCGGCGaCGUuGGAGACgu -5'
11900 5' -58.2 NC_003266.2 + 26020 0.7 0.218105
Target:  5'- -aGuCCACUGCCGCcGCcGCCgCUGUg -3'
miRNA:   3'- caC-GGUGACGGCGaCGuUGGaGACGu -5'
11900 5' -58.2 NC_003266.2 + 3619 0.71 0.160555
Target:  5'- cUGCCGCcGCaGCUGCuGCUUCUGCc -3'
miRNA:   3'- cACGGUGaCGgCGACGuUGGAGACGu -5'
11900 5' -58.2 NC_003266.2 + 13917 0.72 0.156064
Target:  5'- -cGCCGCcGCCGCcGCcauuGCCUgCUGCAu -3'
miRNA:   3'- caCGGUGaCGGCGaCGu---UGGA-GACGU- -5'
11900 5' -58.2 NC_003266.2 + 25012 1.08 0.000254
Target:  5'- aGUGCCACUGCCGCUGCAACCUCUGCAc -3'
miRNA:   3'- -CACGGUGACGGCGACGUUGGAGACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.