Results 1 - 20 of 60 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11904 | 3' | -57.9 | NC_003266.2 | + | 23122 | 0.84 | 0.023012 |
Target: 5'- cUCAGgaacaaCCACCGCCGCCGCAGCAGCc- -3' miRNA: 3'- -AGUCg-----GGUGGCGGUGGUGUUGUCGuc -5' |
|||||||
11904 | 3' | -57.9 | NC_003266.2 | + | 9607 | 0.68 | 0.299348 |
Target: 5'- aCAcCCCACCGCCGCCAgAAgaaaccgugcuCAGCc- -3' miRNA: 3'- aGUcGGGUGGCGGUGGUgUU-----------GUCGuc -5' |
|||||||
11904 | 3' | -57.9 | NC_003266.2 | + | 9304 | 0.68 | 0.322935 |
Target: 5'- gUCuGCCCgugCGCCGCCGgCGAC-GCAGg -3' miRNA: 3'- -AGuCGGGug-GCGGUGGU-GUUGuCGUC- -5' |
|||||||
11904 | 3' | -57.9 | NC_003266.2 | + | 10129 | 0.66 | 0.430651 |
Target: 5'- --cGCCaGCCGCCGCCGCAcuuccucauCGGCu- -3' miRNA: 3'- aguCGGgUGGCGGUGGUGUu--------GUCGuc -5' |
|||||||
11904 | 3' | -57.9 | NC_003266.2 | + | 10932 | 0.74 | 0.128571 |
Target: 5'- cCGGCCCcgcucACgGCgGCCGCGGCGGUAGu -3' miRNA: 3'- aGUCGGG-----UGgCGgUGGUGUUGUCGUC- -5' |
|||||||
11904 | 3' | -57.9 | NC_003266.2 | + | 27993 | 0.73 | 0.136116 |
Target: 5'- aUCGGCCUucuCCGUCACUACAGCcGCGc -3' miRNA: 3'- -AGUCGGGu--GGCGGUGGUGUUGuCGUc -5' |
|||||||
11904 | 3' | -57.9 | NC_003266.2 | + | 9724 | 0.71 | 0.206792 |
Target: 5'- -uGGCCgACCGUCugCGCAucCAGCAa -3' miRNA: 3'- agUCGGgUGGCGGugGUGUu-GUCGUc -5' |
|||||||
11904 | 3' | -57.9 | NC_003266.2 | + | 8102 | 0.7 | 0.224285 |
Target: 5'- -gGGCCagGCCGaCCACCACGAC-GUAGu -3' miRNA: 3'- agUCGGg-UGGC-GGUGGUGUUGuCGUC- -5' |
|||||||
11904 | 3' | -57.9 | NC_003266.2 | + | 17238 | 0.7 | 0.24302 |
Target: 5'- -uGGCgCGCCGCCGCCGguGgGGguGg -3' miRNA: 3'- agUCGgGUGGCGGUGGUguUgUCguC- -5' |
|||||||
11904 | 3' | -57.9 | NC_003266.2 | + | 23254 | 0.69 | 0.291787 |
Target: 5'- cCAGCCaC-CCGCCggGCCGCGAgAGCc- -3' miRNA: 3'- aGUCGG-GuGGCGG--UGGUGUUgUCGuc -5' |
|||||||
11904 | 3' | -57.9 | NC_003266.2 | + | 11591 | 0.69 | 0.283643 |
Target: 5'- cUCAGCaCCgaaaaguugaugGCCGCCAgCuucucggACAGCGGCAGc -3' miRNA: 3'- -AGUCG-GG------------UGGCGGUgG-------UGUUGUCGUC- -5' |
|||||||
11904 | 3' | -57.9 | NC_003266.2 | + | 10160 | 0.7 | 0.236634 |
Target: 5'- --cGCCC-CCGCCACCgaGCGAUGGCc- -3' miRNA: 3'- aguCGGGuGGCGGUGG--UGUUGUCGuc -5' |
|||||||
11904 | 3' | -57.9 | NC_003266.2 | + | 14843 | 0.84 | 0.02372 |
Target: 5'- aUCAGCCUugGCCGCCGCCACugcuGCGGCGc -3' miRNA: 3'- -AGUCGGG--UGGCGGUGGUGu---UGUCGUc -5' |
|||||||
11904 | 3' | -57.9 | NC_003266.2 | + | 12721 | 0.69 | 0.284376 |
Target: 5'- gCuGUCCgugaagGgCGCCACCAgCAGCAGCAGc -3' miRNA: 3'- aGuCGGG------UgGCGGUGGU-GUUGUCGUC- -5' |
|||||||
11904 | 3' | -57.9 | NC_003266.2 | + | 26023 | 0.77 | 0.069771 |
Target: 5'- cUCAGUCCACUGCCGCCGCcGCcGCu- -3' miRNA: 3'- -AGUCGGGUGGCGGUGGUGuUGuCGuc -5' |
|||||||
11904 | 3' | -57.9 | NC_003266.2 | + | 13649 | 0.7 | 0.236634 |
Target: 5'- aUCAGUCC-CCGCUGCCugucgugcCAGCGGCGu -3' miRNA: 3'- -AGUCGGGuGGCGGUGGu-------GUUGUCGUc -5' |
|||||||
11904 | 3' | -57.9 | NC_003266.2 | + | 3812 | 0.69 | 0.284376 |
Target: 5'- -aGGCCUcgaGCUggGCCAUCaACAGCAGCAGc -3' miRNA: 3'- agUCGGG---UGG--CGGUGG-UGUUGUCGUC- -5' |
|||||||
11904 | 3' | -57.9 | NC_003266.2 | + | 11777 | 0.68 | 0.322935 |
Target: 5'- cUCAGCUCgcGCCGCCugCugGcgcuuaccgcGCGGCGc -3' miRNA: 3'- -AGUCGGG--UGGCGGugGugU----------UGUCGUc -5' |
|||||||
11904 | 3' | -57.9 | NC_003266.2 | + | 18059 | 0.75 | 0.1082 |
Target: 5'- gCGGgCCACgGCCACCG--GCGGCAGg -3' miRNA: 3'- aGUCgGGUGgCGGUGGUguUGUCGUC- -5' |
|||||||
11904 | 3' | -57.9 | NC_003266.2 | + | 14194 | 0.71 | 0.19049 |
Target: 5'- uUCAGCUgACCGCC-CCACcGCgAGCGc -3' miRNA: 3'- -AGUCGGgUGGCGGuGGUGuUG-UCGUc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home