miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11904 3' -57.9 NC_003266.2 + 13287 0.7 0.249548
Target:  5'- cCGGCCgCACgggUGCUGCCGCAGCGGUg- -3'
miRNA:   3'- aGUCGG-GUG---GCGGUGGUGUUGUCGuc -5'
11904 3' -57.9 NC_003266.2 + 13361 0.67 0.347882
Target:  5'- gCGGCCucgggCACCGCUGCgGCAGCAcccguGCGGc -3'
miRNA:   3'- aGUCGG-----GUGGCGGUGgUGUUGU-----CGUC- -5'
11904 3' -57.9 NC_003266.2 + 13573 0.67 0.365262
Target:  5'- --cGCCCguaaacGCCGCUGgCACGACAGgCAGc -3'
miRNA:   3'- aguCGGG------UGGCGGUgGUGUUGUC-GUC- -5'
11904 3' -57.9 NC_003266.2 + 13649 0.7 0.236634
Target:  5'- aUCAGUCC-CCGCUGCCugucgugcCAGCGGCGu -3'
miRNA:   3'- -AGUCGGGuGGCGGUGGu-------GUUGUCGUc -5'
11904 3' -57.9 NC_003266.2 + 13885 0.69 0.294793
Target:  5'- gCAGCCC-CCGCUggaggcuccuuacguGCCACcGCGGUAc -3'
miRNA:   3'- aGUCGGGuGGCGG---------------UGGUGuUGUCGUc -5'
11904 3' -57.9 NC_003266.2 + 13933 0.67 0.373277
Target:  5'- cCAGCgggggcugcaucgCCGCCGCCGCCGCcauugccuGCuGCAu -3'
miRNA:   3'- aGUCG-------------GGUGGCGGUGGUGu-------UGuCGUc -5'
11904 3' -57.9 NC_003266.2 + 14194 0.71 0.19049
Target:  5'- uUCAGCUgACCGCC-CCACcGCgAGCGc -3'
miRNA:   3'- -AGUCGGgUGGCGGuGGUGuUG-UCGUc -5'
11904 3' -57.9 NC_003266.2 + 14599 0.68 0.339416
Target:  5'- -aAGUCCACC-CCGCagccggGCAACAGCAc -3'
miRNA:   3'- agUCGGGUGGcGGUGg-----UGUUGUCGUc -5'
11904 3' -57.9 NC_003266.2 + 14843 0.84 0.02372
Target:  5'- aUCAGCCUugGCCGCCGCCACugcuGCGGCGc -3'
miRNA:   3'- -AGUCGGG--UGGCGGUGGUGu---UGUCGUc -5'
11904 3' -57.9 NC_003266.2 + 15739 0.67 0.373277
Target:  5'- gUAGCaCCACCGCCAUgcgUGCGGCGcgagccuugcugcGCAGg -3'
miRNA:   3'- aGUCG-GGUGGCGGUG---GUGUUGU-------------CGUC- -5'
11904 3' -57.9 NC_003266.2 + 15821 0.66 0.401783
Target:  5'- -uGGCCCugCGCagcaaggcucgCGCCGCAcgcAUGGCGGu -3'
miRNA:   3'- agUCGGGugGCG-----------GUGGUGU---UGUCGUC- -5'
11904 3' -57.9 NC_003266.2 + 15856 0.71 0.201228
Target:  5'- cUCGGagaCgCGCgGCCACgGCGGCGGCAGc -3'
miRNA:   3'- -AGUCg--G-GUGgCGGUGgUGUUGUCGUC- -5'
11904 3' -57.9 NC_003266.2 + 16078 0.67 0.347028
Target:  5'- aUCGcGCCUgagaucuACgGCC-CCGCGGCGGCGGu -3'
miRNA:   3'- -AGU-CGGG-------UGgCGGuGGUGUUGUCGUC- -5'
11904 3' -57.9 NC_003266.2 + 16157 0.67 0.356498
Target:  5'- uUCAuCCuuCACCGCCGCCGCGggGCcGUAGa -3'
miRNA:   3'- -AGUcGG--GUGGCGGUGGUGU--UGuCGUC- -5'
11904 3' -57.9 NC_003266.2 + 16913 0.68 0.299348
Target:  5'- cCGGCUC-CCGCCGCCGCAAgAcCAc -3'
miRNA:   3'- aGUCGGGuGGCGGUGGUGUUgUcGUc -5'
11904 3' -57.9 NC_003266.2 + 16937 0.68 0.322935
Target:  5'- cCA-CCCGCCGCCgucgucGCCGC-ACAGCuGa -3'
miRNA:   3'- aGUcGGGUGGCGG------UGGUGuUGUCGuC- -5'
11904 3' -57.9 NC_003266.2 + 17165 0.67 0.383234
Target:  5'- gCGGgaUgCGCCGCCACCcccacCGGCGGCGGc -3'
miRNA:   3'- aGUC--GgGUGGCGGUGGu----GUUGUCGUC- -5'
11904 3' -57.9 NC_003266.2 + 17238 0.7 0.24302
Target:  5'- -uGGCgCGCCGCCGCCGguGgGGguGg -3'
miRNA:   3'- agUCGgGUGGCGGUGGUguUgUCguC- -5'
11904 3' -57.9 NC_003266.2 + 18059 0.75 0.1082
Target:  5'- gCGGgCCACgGCCACCG--GCGGCAGg -3'
miRNA:   3'- aGUCgGGUGgCGGUGGUguUGUCGUC- -5'
11904 3' -57.9 NC_003266.2 + 18940 0.7 0.229158
Target:  5'- uUCAGaaCCCGCCGCCACCACucuaacuaugauauaGaccuggcuuucuuugACAGCAa -3'
miRNA:   3'- -AGUC--GGGUGGCGGUGGUG---------------U---------------UGUCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.