miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11904 3' -57.9 NC_003266.2 + 11836 0.75 0.10211
Target:  5'- gCAGCCCAgCCGCCgggucuuggaaGCCGCGGCGGUc- -3'
miRNA:   3'- aGUCGGGU-GGCGG-----------UGGUGUUGUCGuc -5'
11904 3' -57.9 NC_003266.2 + 30794 0.75 0.103302
Target:  5'- -uGGCUC-CCGCCugaucccgacacaccACCACAGCAGCAGc -3'
miRNA:   3'- agUCGGGuGGCGG---------------UGGUGUUGUCGUC- -5'
11904 3' -57.9 NC_003266.2 + 11165 0.72 0.165826
Target:  5'- aUCAGCCCugCGCgCGCgCACGugGccGCGGc -3'
miRNA:   3'- -AGUCGGGugGCG-GUG-GUGUugU--CGUC- -5'
11904 3' -57.9 NC_003266.2 + 10860 0.72 0.170518
Target:  5'- cCAGCcacuaCCGCCGCgGCCGcCGugAGCGGg -3'
miRNA:   3'- aGUCG-----GGUGGCGgUGGU-GUugUCGUC- -5'
11904 3' -57.9 NC_003266.2 + 15856 0.71 0.201228
Target:  5'- cUCGGagaCgCGCgGCCACgGCGGCGGCAGc -3'
miRNA:   3'- -AGUCg--G-GUGgCGGUGgUGUUGUCGUC- -5'
11904 3' -57.9 NC_003266.2 + 16913 0.68 0.299348
Target:  5'- cCGGCUC-CCGCCGCCGCAAgAcCAc -3'
miRNA:   3'- aGUCGGGuGGCGGUGGUGUUgUcGUc -5'
11904 3' -57.9 NC_003266.2 + 13885 0.69 0.294793
Target:  5'- gCAGCCC-CCGCUggaggcuccuuacguGCCACcGCGGUAc -3'
miRNA:   3'- aGUCGGGuGGCGG---------------UGGUGuUGUCGUc -5'
11904 3' -57.9 NC_003266.2 + 13287 0.7 0.249548
Target:  5'- cCGGCCgCACgggUGCUGCCGCAGCGGUg- -3'
miRNA:   3'- aGUCGG-GUG---GCGGUGGUGUUGUCGuc -5'
11904 3' -57.9 NC_003266.2 + 24551 0.7 0.236634
Target:  5'- -aGGCCCGCCGCgACUACAuCcGCGa -3'
miRNA:   3'- agUCGGGUGGCGgUGGUGUuGuCGUc -5'
11904 3' -57.9 NC_003266.2 + 10831 0.7 0.23039
Target:  5'- uUCuGCCU-CCGCC-CCAgCAGCAGCAa -3'
miRNA:   3'- -AGuCGGGuGGCGGuGGU-GUUGUCGUc -5'
11904 3' -57.9 NC_003266.2 + 18940 0.7 0.229158
Target:  5'- uUCAGaaCCCGCCGCCACCACucuaacuaugauauaGaccuggcuuucuuugACAGCAa -3'
miRNA:   3'- -AGUC--GGGUGGCGGUGGUG---------------U---------------UGUCGUc -5'
11904 3' -57.9 NC_003266.2 + 8102 0.7 0.224285
Target:  5'- -gGGCCagGCCGaCCACCACGAC-GUAGu -3'
miRNA:   3'- agUCGGg-UGGC-GGUGGUGUUGuCGUC- -5'
11904 3' -57.9 NC_003266.2 + 9724 0.71 0.206792
Target:  5'- -uGGCCgACCGUCugCGCAucCAGCAa -3'
miRNA:   3'- agUCGGgUGGCGGugGUGUu-GUCGUc -5'
11904 3' -57.9 NC_003266.2 + 14194 0.71 0.19049
Target:  5'- uUCAGCUgACCGCC-CCACcGCgAGCGc -3'
miRNA:   3'- -AGUCGGgUGGCGGuGGUGuUG-UCGUc -5'
11904 3' -57.9 NC_003266.2 + 27993 0.73 0.136116
Target:  5'- aUCGGCCUucuCCGUCACUACAGCcGCGc -3'
miRNA:   3'- -AGUCGGGu--GGCGGUGGUGUUGuCGUc -5'
11904 3' -57.9 NC_003266.2 + 10932 0.74 0.128571
Target:  5'- cCGGCCCcgcucACgGCgGCCGCGGCGGUAGu -3'
miRNA:   3'- aGUCGGG-----UGgCGgUGGUGUUGUCGUC- -5'
11904 3' -57.9 NC_003266.2 + 18059 0.75 0.1082
Target:  5'- gCGGgCCACgGCCACCG--GCGGCAGg -3'
miRNA:   3'- aGUCgGGUGgCGGUGGUguUGUCGUC- -5'
11904 3' -57.9 NC_003266.2 + 26023 0.77 0.069771
Target:  5'- cUCAGUCCACUGCCGCCGCcGCcGCu- -3'
miRNA:   3'- -AGUCGGGUGGCGGUGGUGuUGuCGuc -5'
11904 3' -57.9 NC_003266.2 + 14843 0.84 0.02372
Target:  5'- aUCAGCCUugGCCGCCGCCACugcuGCGGCGc -3'
miRNA:   3'- -AGUCGGG--UGGCGGUGGUGu---UGUCGUc -5'
11904 3' -57.9 NC_003266.2 + 10129 0.66 0.430651
Target:  5'- --cGCCaGCCGCCGCCGCAcuuccucauCGGCu- -3'
miRNA:   3'- aguCGGgUGGCGGUGGUGUu--------GUCGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.