miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11905 3' -54.4 NC_003266.2 + 4217 0.66 0.641972
Target:  5'- ---cUGGgaGGGAUGCAUgCGGGGgGa -3'
miRNA:   3'- ugaaACCaaCCUUGCGUGgGCUCCgC- -5'
11905 3' -54.4 NC_003266.2 + 14462 0.66 0.612261
Target:  5'- gGCUg-GGUUGGGAcccCGUgaccgagcuggucauGCCCGGGGUGu -3'
miRNA:   3'- -UGAaaCCAACCUU---GCG---------------UGGGCUCCGC- -5'
11905 3' -54.4 NC_003266.2 + 13373 0.67 0.573622
Target:  5'- ---cUGGgcaGGAucACGCGCCCGcgcuugcuGGGCGa -3'
miRNA:   3'- ugaaACCaa-CCU--UGCGUGGGC--------UCCGC- -5'
11905 3' -54.4 NC_003266.2 + 10909 0.67 0.562355
Target:  5'- gGCgguagUGGcUGGAAguugcUGCugCUGGGGCGg -3'
miRNA:   3'- -UGaa---ACCaACCUU-----GCGugGGCUCCGC- -5'
11905 3' -54.4 NC_003266.2 + 21611 0.67 0.551149
Target:  5'- ---cUGGUUGcGGCGCaggguagguuccACCUGGGGCGa -3'
miRNA:   3'- ugaaACCAACcUUGCG------------UGGGCUCCGC- -5'
11905 3' -54.4 NC_003266.2 + 10916 0.69 0.433985
Target:  5'- gGCUUUGGaagaGGGcgaggggcugGCGCGCCUGgGGGCGu -3'
miRNA:   3'- -UGAAACCaa--CCU----------UGCGUGGGC-UCCGC- -5'
11905 3' -54.4 NC_003266.2 + 15443 0.7 0.384747
Target:  5'- ----cGGUUGGGgucugcGCGCGCCCagcaagauguacgGAGGCGc -3'
miRNA:   3'- ugaaaCCAACCU------UGCGUGGG-------------CUCCGC- -5'
11905 3' -54.4 NC_003266.2 + 22307 0.73 0.256474
Target:  5'- ---cUGGUUGGuAGCGCACCC--GGCGu -3'
miRNA:   3'- ugaaACCAACC-UUGCGUGGGcuCCGC- -5'
11905 3' -54.4 NC_003266.2 + 17087 0.74 0.243077
Target:  5'- uGCUcgGG-UGGuAGCGCGCCCGcGGCa -3'
miRNA:   3'- -UGAaaCCaACC-UUGCGUGGGCuCCGc -5'
11905 3' -54.4 NC_003266.2 + 30764 1.08 0.000834
Target:  5'- gACUUUGGUUGGAACGCACCCGAGGCGc -3'
miRNA:   3'- -UGAAACCAACCUUGCGUGGGCUCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.