Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11905 | 5' | -58.2 | NC_003266.2 | + | 30798 | 1.11 | 0.00022 |
Target: 5'- uCCCGCCUGAUCCCGACACACCACCACa -3' miRNA: 3'- -GGGCGGACUAGGGCUGUGUGGUGGUG- -5' |
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11905 | 5' | -58.2 | NC_003266.2 | + | 17232 | 0.76 | 0.091033 |
Target: 5'- gCCCGCgCUGAUCCCcau-CAUCGCCGCg -3' miRNA: 3'- -GGGCG-GACUAGGGcuguGUGGUGGUG- -5' |
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11905 | 5' | -58.2 | NC_003266.2 | + | 27588 | 0.74 | 0.143072 |
Target: 5'- uUCCaCCUGAUCCCGA-AUACCACCu- -3' miRNA: 3'- -GGGcGGACUAGGGCUgUGUGGUGGug -5' |
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11905 | 5' | -58.2 | NC_003266.2 | + | 17250 | 0.72 | 0.188239 |
Target: 5'- aCCGCUUGcugaUGGCGCGCCGCCGCc -3' miRNA: 3'- gGGCGGACuaggGCUGUGUGGUGGUG- -5' |
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11905 | 5' | -58.2 | NC_003266.2 | + | 8473 | 0.71 | 0.209585 |
Target: 5'- gCCGCCccuaccgCCCGGCGCgcguccucGCCGCCGCu -3' miRNA: 3'- gGGCGGacua---GGGCUGUG--------UGGUGGUG- -5' |
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11905 | 5' | -58.2 | NC_003266.2 | + | 8807 | 0.7 | 0.24549 |
Target: 5'- gCCCGCCUcGUUCCaGACGCggcuguaaACCACgGCg -3' miRNA: 3'- -GGGCGGAcUAGGG-CUGUG--------UGGUGgUG- -5' |
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11905 | 5' | -58.2 | NC_003266.2 | + | 19384 | 0.7 | 0.24549 |
Target: 5'- aCCGCCUGAUUCC-ACAUACUgaaauACCGg -3' miRNA: 3'- gGGCGGACUAGGGcUGUGUGG-----UGGUg -5' |
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11905 | 5' | -58.2 | NC_003266.2 | + | 8528 | 0.7 | 0.272164 |
Target: 5'- aCCUGCCcGcgCgCGGCGCcgacgugccccuGCCACCACu -3' miRNA: 3'- -GGGCGGaCuaGgGCUGUG------------UGGUGGUG- -5' |
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11905 | 5' | -58.2 | NC_003266.2 | + | 34030 | 0.69 | 0.293662 |
Target: 5'- gCUGCCUGAUUgCGAUAC-CCuguCCAUg -3' miRNA: 3'- gGGCGGACUAGgGCUGUGuGGu--GGUG- -5' |
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11905 | 5' | -58.2 | NC_003266.2 | + | 24509 | 0.69 | 0.301117 |
Target: 5'- aCCGCCUGGggCagaaCGugcuGCACACCACCcuGCg -3' miRNA: 3'- gGGCGGACUa-Gg---GC----UGUGUGGUGG--UG- -5' |
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11905 | 5' | -58.2 | NC_003266.2 | + | 12644 | 0.69 | 0.308716 |
Target: 5'- cCCCGaCCgGAgCCUG-CACGCC-CCACa -3' miRNA: 3'- -GGGC-GGaCUaGGGCuGUGUGGuGGUG- -5' |
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11905 | 5' | -58.2 | NC_003266.2 | + | 17070 | 0.69 | 0.316462 |
Target: 5'- gCCCGCggcagGGUCagaGGCGCGCgGCCGCg -3' miRNA: 3'- -GGGCGga---CUAGgg-CUGUGUGgUGGUG- -5' |
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11905 | 5' | -58.2 | NC_003266.2 | + | 11446 | 0.68 | 0.324353 |
Target: 5'- uCUCGUU--GUCCCGACugugcuGCACCACCAg -3' miRNA: 3'- -GGGCGGacUAGGGCUG------UGUGGUGGUg -5' |
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11905 | 5' | -58.2 | NC_003266.2 | + | 16572 | 0.68 | 0.332389 |
Target: 5'- cCUCGCgCUucaagcCCCGACGCGgCGCCGCg -3' miRNA: 3'- -GGGCG-GAcua---GGGCUGUGUgGUGGUG- -5' |
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11905 | 5' | -58.2 | NC_003266.2 | + | 13890 | 0.68 | 0.332389 |
Target: 5'- cCCCGCUgGAggcUCCUuACGUGCCACCGCg -3' miRNA: 3'- -GGGCGGaCU---AGGGcUGUGUGGUGGUG- -5' |
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11905 | 5' | -58.2 | NC_003266.2 | + | 8895 | 0.68 | 0.340571 |
Target: 5'- gCCCGC--GAUCCCGAgGgCGCCgugguuuacaGCCGCg -3' miRNA: 3'- -GGGCGgaCUAGGGCUgU-GUGG----------UGGUG- -5' |
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11905 | 5' | -58.2 | NC_003266.2 | + | 9692 | 0.68 | 0.348897 |
Target: 5'- cCCCagGCgUGGUCCUGACACcUgGCCAg -3' miRNA: 3'- -GGG--CGgACUAGGGCUGUGuGgUGGUg -5' |
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11905 | 5' | -58.2 | NC_003266.2 | + | 15770 | 0.68 | 0.348897 |
Target: 5'- gCCGCCgGG---CGAUGCGCCGCCGCc -3' miRNA: 3'- gGGCGGaCUaggGCUGUGUGGUGGUG- -5' |
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11905 | 5' | -58.2 | NC_003266.2 | + | 23221 | 0.68 | 0.365114 |
Target: 5'- cUCCGCCUcugCCCcugaagaGACAUACCuACCGCc -3' miRNA: 3'- -GGGCGGAcuaGGG-------CUGUGUGG-UGGUG- -5' |
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11905 | 5' | -58.2 | NC_003266.2 | + | 9307 | 0.68 | 0.365982 |
Target: 5'- aCCGUCUG--CCCG-UGCGCCGCCGg -3' miRNA: 3'- gGGCGGACuaGGGCuGUGUGGUGGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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