miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11905 5' -58.2 NC_003266.2 + 30798 1.11 0.00022
Target:  5'- uCCCGCCUGAUCCCGACACACCACCACa -3'
miRNA:   3'- -GGGCGGACUAGGGCUGUGUGGUGGUG- -5'
11905 5' -58.2 NC_003266.2 + 11844 0.66 0.469675
Target:  5'- gCCGCCgGGUCuuGGaa-GCCGCgGCg -3'
miRNA:   3'- gGGCGGaCUAGggCUgugUGGUGgUG- -5'
11905 5' -58.2 NC_003266.2 + 16999 0.67 0.395408
Target:  5'- aCCGCCgcggccgcgcgccucUGA-CCCugccgcgGGCGCGCUACCACc -3'
miRNA:   3'- gGGCGG---------------ACUaGGG-------CUGUGUGGUGGUG- -5'
11905 5' -58.2 NC_003266.2 + 34157 0.67 0.39267
Target:  5'- ---aCCUGGUCCgGGCACuGCaCACCGCu -3'
miRNA:   3'- gggcGGACUAGGgCUGUG-UG-GUGGUG- -5'
11905 5' -58.2 NC_003266.2 + 12968 0.67 0.39267
Target:  5'- cCCCaGCCcGcgCUCGACAUgACCGCgCGCa -3'
miRNA:   3'- -GGG-CGGaCuaGGGCUGUG-UGGUG-GUG- -5'
11905 5' -58.2 NC_003266.2 + 15211 0.67 0.383635
Target:  5'- gCCCGCCcGcgCCC-AC-CAUUACCACc -3'
miRNA:   3'- -GGGCGGaCuaGGGcUGuGUGGUGGUG- -5'
11905 5' -58.2 NC_003266.2 + 9692 0.68 0.348897
Target:  5'- cCCCagGCgUGGUCCUGACACcUgGCCAg -3'
miRNA:   3'- -GGG--CGgACUAGGGCUGUGuGgUGGUg -5'
11905 5' -58.2 NC_003266.2 + 13890 0.68 0.332389
Target:  5'- cCCCGCUgGAggcUCCUuACGUGCCACCGCg -3'
miRNA:   3'- -GGGCGGaCU---AGGGcUGUGUGGUGGUG- -5'
11905 5' -58.2 NC_003266.2 + 24509 0.69 0.301117
Target:  5'- aCCGCCUGGggCagaaCGugcuGCACACCACCcuGCg -3'
miRNA:   3'- gGGCGGACUa-Gg---GC----UGUGUGGUGG--UG- -5'
11905 5' -58.2 NC_003266.2 + 8807 0.7 0.24549
Target:  5'- gCCCGCCUcGUUCCaGACGCggcuguaaACCACgGCg -3'
miRNA:   3'- -GGGCGGAcUAGGG-CUGUG--------UGGUGgUG- -5'
11905 5' -58.2 NC_003266.2 + 27588 0.74 0.143072
Target:  5'- uUCCaCCUGAUCCCGA-AUACCACCu- -3'
miRNA:   3'- -GGGcGGACUAGGGCUgUGUGGUGGug -5'
11905 5' -58.2 NC_003266.2 + 17232 0.76 0.091033
Target:  5'- gCCCGCgCUGAUCCCcau-CAUCGCCGCg -3'
miRNA:   3'- -GGGCG-GACUAGGGcuguGUGGUGGUG- -5'
11905 5' -58.2 NC_003266.2 + 11446 0.68 0.324353
Target:  5'- uCUCGUU--GUCCCGACugugcuGCACCACCAg -3'
miRNA:   3'- -GGGCGGacUAGGGCUG------UGUGGUGGUg -5'
11905 5' -58.2 NC_003266.2 + 17070 0.69 0.316462
Target:  5'- gCCCGCggcagGGUCagaGGCGCGCgGCCGCg -3'
miRNA:   3'- -GGGCGga---CUAGgg-CUGUGUGgUGGUG- -5'
11905 5' -58.2 NC_003266.2 + 12644 0.69 0.308716
Target:  5'- cCCCGaCCgGAgCCUG-CACGCC-CCACa -3'
miRNA:   3'- -GGGC-GGaCUaGGGCuGUGUGGuGGUG- -5'
11905 5' -58.2 NC_003266.2 + 34030 0.69 0.293662
Target:  5'- gCUGCCUGAUUgCGAUAC-CCuguCCAUg -3'
miRNA:   3'- gGGCGGACUAGgGCUGUGuGGu--GGUG- -5'
11905 5' -58.2 NC_003266.2 + 8528 0.7 0.272164
Target:  5'- aCCUGCCcGcgCgCGGCGCcgacgugccccuGCCACCACu -3'
miRNA:   3'- -GGGCGGaCuaGgGCUGUG------------UGGUGGUG- -5'
11905 5' -58.2 NC_003266.2 + 19384 0.7 0.24549
Target:  5'- aCCGCCUGAUUCC-ACAUACUgaaauACCGg -3'
miRNA:   3'- gGGCGGACUAGGGcUGUGUGG-----UGGUg -5'
11905 5' -58.2 NC_003266.2 + 8473 0.71 0.209585
Target:  5'- gCCGCCccuaccgCCCGGCGCgcguccucGCCGCCGCu -3'
miRNA:   3'- gGGCGGacua---GGGCUGUG--------UGGUGGUG- -5'
11905 5' -58.2 NC_003266.2 + 11837 0.66 0.469675
Target:  5'- uCCC-CCUcGGUCCCGGCcccggucaggGC-CCGCUGCa -3'
miRNA:   3'- -GGGcGGA-CUAGGGCUG----------UGuGGUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.