miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11906 3' -58.9 NC_003266.2 + 16362 0.66 0.439016
Target:  5'- gGCGGCCgagcgCCUGGGCGaguuUGcuuACGGCaagCGCa -3'
miRNA:   3'- -UGCUGGa----GGACCUGU----ACc--UGCCG---GCG- -5'
11906 3' -58.9 NC_003266.2 + 19904 0.66 0.429363
Target:  5'- -gGGCa-CCUGGAUGUGGAaUGGCaCGUa -3'
miRNA:   3'- ugCUGgaGGACCUGUACCU-GCCG-GCG- -5'
11906 3' -58.9 NC_003266.2 + 11669 0.66 0.426491
Target:  5'- aGCGACgaUCUGGGgGUguaccgcaacgacaGGAUGcGCCGCg -3'
miRNA:   3'- -UGCUGgaGGACCUgUA--------------CCUGC-CGGCG- -5'
11906 3' -58.9 NC_003266.2 + 18229 0.66 0.410438
Target:  5'- ---uCCUUCUGGACAgcaGCGGCgGCg -3'
miRNA:   3'- ugcuGGAGGACCUGUaccUGCCGgCG- -5'
11906 3' -58.9 NC_003266.2 + 6393 0.66 0.410438
Target:  5'- ---cCCUUCUGcucgcGCAaGGGCGGCCGCc -3'
miRNA:   3'- ugcuGGAGGACc----UGUaCCUGCCGGCG- -5'
11906 3' -58.9 NC_003266.2 + 12169 0.66 0.409506
Target:  5'- cACGGCCUCCaGGAUGgccgagagccgguUGGccuGgGGCUGCu -3'
miRNA:   3'- -UGCUGGAGGaCCUGU-------------ACC---UgCCGGCG- -5'
11906 3' -58.9 NC_003266.2 + 4442 0.66 0.392041
Target:  5'- aAUGGCUa--UGGGCccGUGGGCGGCgGCu -3'
miRNA:   3'- -UGCUGGaggACCUG--UACCUGCCGgCG- -5'
11906 3' -58.9 NC_003266.2 + 5178 0.67 0.348462
Target:  5'- uGCGACC-CUggaaGGACc-GGACccuGGCCGCg -3'
miRNA:   3'- -UGCUGGaGGa---CCUGuaCCUG---CCGGCG- -5'
11906 3' -58.9 NC_003266.2 + 13259 0.68 0.324022
Target:  5'- aGCGACCggcgcccgUCCUcGGCGcUGucCGGCCGCa -3'
miRNA:   3'- -UGCUGG--------AGGAcCUGU-ACcuGCCGGCG- -5'
11906 3' -58.9 NC_003266.2 + 13051 0.68 0.324022
Target:  5'- -gGACUaCCU--GCAUcGGGCGGCCGCc -3'
miRNA:   3'- ugCUGGaGGAccUGUA-CCUGCCGGCG- -5'
11906 3' -58.9 NC_003266.2 + 9385 0.68 0.324022
Target:  5'- uGCGACC-CCgcgaGGAC--GGGCGcGCCGUc -3'
miRNA:   3'- -UGCUGGaGGa---CCUGuaCCUGC-CGGCG- -5'
11906 3' -58.9 NC_003266.2 + 17861 0.68 0.308451
Target:  5'- aGCGucuCCUCCgcgucgGGACggGGACGcuuGUCGCc -3'
miRNA:   3'- -UGCu--GGAGGa-----CCUGuaCCUGC---CGGCG- -5'
11906 3' -58.9 NC_003266.2 + 9420 0.71 0.204173
Target:  5'- -gGGCCaCCUGGAgAUGcGCGGCgGCg -3'
miRNA:   3'- ugCUGGaGGACCUgUACcUGCCGgCG- -5'
11906 3' -58.9 NC_003266.2 + 8805 0.71 0.198791
Target:  5'- aACGACCUCgC-GGccacCGUGGAgcgcgcCGGCCGCg -3'
miRNA:   3'- -UGCUGGAG-GaCCu---GUACCU------GCCGGCG- -5'
11906 3' -58.9 NC_003266.2 + 30983 1.11 0.000183
Target:  5'- aACGACCUCCUGGACAUGGACGGCCGCg -3'
miRNA:   3'- -UGCUGGAGGACCUGUACCUGCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.