miRNA display CGI


Results 41 - 60 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11910 5' -54.3 NC_003278.1 + 12940 0.66 0.638108
Target:  5'- ----aGCCagaGGUGCAGCacgGCGCCGcGCg -3'
miRNA:   3'- cauugCGGa--CCGCGUUG---UGCGGUuCG- -5'
11910 5' -54.3 NC_003278.1 + 13444 0.78 0.113099
Target:  5'- -cAACGCgCUgccggccagcuccGGCaGCAGCACGCCGGGCa -3'
miRNA:   3'- caUUGCG-GA-------------CCG-CGUUGUGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 13615 0.67 0.569161
Target:  5'- -gAGCGCCUGGCcGCcgaAGCccugGCGCagauuGAGCg -3'
miRNA:   3'- caUUGCGGACCG-CG---UUG----UGCGg----UUCG- -5'
11910 5' -54.3 NC_003278.1 + 13846 0.79 0.092137
Target:  5'- --uGCGCCggGGCGCug-GCGCCGAGCa -3'
miRNA:   3'- cauUGCGGa-CCGCGuugUGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 13882 0.69 0.43891
Target:  5'- aUGGCGCC-GGCGCucuuGCccagguCGCCcAGCa -3'
miRNA:   3'- cAUUGCGGaCCGCGu---UGu-----GCGGuUCG- -5'
11910 5' -54.3 NC_003278.1 + 14018 0.67 0.535313
Target:  5'- ---cCGCCUGgaccuGCGCAuCACGCCGgacauccuGGCc -3'
miRNA:   3'- cauuGCGGAC-----CGCGUuGUGCGGU--------UCG- -5'
11910 5' -54.3 NC_003278.1 + 14057 0.69 0.428806
Target:  5'- ----gGCCUGGC-CGGCGCcgaggcccuggGCCAGGCc -3'
miRNA:   3'- cauugCGGACCGcGUUGUG-----------CGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 14221 0.77 0.12759
Target:  5'- gGUGACGCC-GGCG--GCGCGCCcGGCg -3'
miRNA:   3'- -CAUUGCGGaCCGCguUGUGCGGuUCG- -5'
11910 5' -54.3 NC_003278.1 + 14302 0.72 0.280031
Target:  5'- -gGACGCCggcgaaGGCGCggUACaucagGCCGAGUg -3'
miRNA:   3'- caUUGCGGa-----CCGCGuuGUG-----CGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 14461 0.7 0.3712
Target:  5'- -cGGCGCC-GGC-CAGCAcCGCCAcgacGGCg -3'
miRNA:   3'- caUUGCGGaCCGcGUUGU-GCGGU----UCG- -5'
11910 5' -54.3 NC_003278.1 + 14753 0.66 0.638108
Target:  5'- ---cCGCC-GGCaGCAACccgaccACGCUggGCg -3'
miRNA:   3'- cauuGCGGaCCG-CGUUG------UGCGGuuCG- -5'
11910 5' -54.3 NC_003278.1 + 15324 0.72 0.272689
Target:  5'- -cGACGCC-GGCggaguacuucaGCGAguCGCCGAGCa -3'
miRNA:   3'- caUUGCGGaCCG-----------CGUUguGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 15514 0.67 0.535313
Target:  5'- --cAUGCC-GG-GCAugGCGCCGAGg -3'
miRNA:   3'- cauUGCGGaCCgCGUugUGCGGUUCg -5'
11910 5' -54.3 NC_003278.1 + 15884 0.74 0.21943
Target:  5'- --uGCGCCUGGCuGUugAugGCGCCAuuGGCc -3'
miRNA:   3'- cauUGCGGACCG-CG--UugUGCGGU--UCG- -5'
11910 5' -54.3 NC_003278.1 + 16172 0.66 0.615033
Target:  5'- -gGGCGCCgcgcugGGUGCGgaaggcgcGCACGUCGcucugcugAGCg -3'
miRNA:   3'- caUUGCGGa-----CCGCGU--------UGUGCGGU--------UCG- -5'
11910 5' -54.3 NC_003278.1 + 16288 0.72 0.271963
Target:  5'- -cGACGCaagGGCGCGGuggcucugucgauCGCGCUGAGCa -3'
miRNA:   3'- caUUGCGga-CCGCGUU-------------GUGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 16627 0.75 0.190847
Target:  5'- -gAGCGCgaUUGGCGCGAC-CGCCA-GCu -3'
miRNA:   3'- caUUGCG--GACCGCGUUGuGCGGUuCG- -5'
11910 5' -54.3 NC_003278.1 + 16662 0.66 0.603514
Target:  5'- -cGACGcCCUGGuCGCAcgucacCGCGaCGAGCu -3'
miRNA:   3'- caUUGC-GGACC-GCGUu-----GUGCgGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 16745 0.69 0.428806
Target:  5'- cGUAcCGCCgccaacuGCGCGACugGCCgGAGUc -3'
miRNA:   3'- -CAUuGCGGac-----CGCGUUGugCGG-UUCG- -5'
11910 5' -54.3 NC_003278.1 + 17183 0.67 0.579425
Target:  5'- -cAACGCCgccacugUGGUGguGCGggugaaGCCGGGCg -3'
miRNA:   3'- caUUGCGG-------ACCGCguUGUg-----CGGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.