miRNA display CGI


Results 21 - 40 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11910 5' -54.3 NC_003278.1 + 7006 0.72 0.28753
Target:  5'- -cGAUGCCgUGGUGCAGCAgCGCgauGGCg -3'
miRNA:   3'- caUUGCGG-ACCGCGUUGU-GCGgu-UCG- -5'
11910 5' -54.3 NC_003278.1 + 8049 0.67 0.535313
Target:  5'- ---cUGCUcGGCGCcuGGCugGCCAccGGCa -3'
miRNA:   3'- cauuGCGGaCCGCG--UUGugCGGU--UCG- -5'
11910 5' -54.3 NC_003278.1 + 8363 0.67 0.577141
Target:  5'- --uGCGCCUGGUcugcuaccagcgcuGCGGCGCccgcuuccGCCGcAGCg -3'
miRNA:   3'- cauUGCGGACCG--------------CGUUGUG--------CGGU-UCG- -5'
11910 5' -54.3 NC_003278.1 + 8412 0.67 0.524183
Target:  5'- gGUGGCGCCgcaGaGCGCGuuugugcauuGCGCGUacauCGAGCg -3'
miRNA:   3'- -CAUUGCGGa--C-CGCGU----------UGUGCG----GUUCG- -5'
11910 5' -54.3 NC_003278.1 + 8707 0.68 0.480627
Target:  5'- -cGACGCCccUGGCGU-ACAgGUCGAGg -3'
miRNA:   3'- caUUGCGG--ACCGCGuUGUgCGGUUCg -5'
11910 5' -54.3 NC_003278.1 + 9010 0.7 0.380429
Target:  5'- ---uCGCCcgGGCggcuaugccgGCGGCAcCGCCGAGCa -3'
miRNA:   3'- cauuGCGGa-CCG----------CGUUGU-GCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 9047 0.72 0.272689
Target:  5'- -cAGCGCCUGGCG-AACGCucGCCAGa- -3'
miRNA:   3'- caUUGCGGACCGCgUUGUG--CGGUUcg -5'
11910 5' -54.3 NC_003278.1 + 9137 0.68 0.480627
Target:  5'- -cAGCGCCUGGgcuaCGuCAGCGugcaggccuuCGCCGAGUc -3'
miRNA:   3'- caUUGCGGACC----GC-GUUGU----------GCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 9362 0.67 0.556679
Target:  5'- --uGCGCCgaGGC-CAGCgcgugagccuucuGCGCCAGGUg -3'
miRNA:   3'- cauUGCGGa-CCGcGUUG-------------UGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 9461 0.69 0.409018
Target:  5'- ---uCGaCCUGGCGCAgGCcCGCCuGGCc -3'
miRNA:   3'- cauuGC-GGACCGCGU-UGuGCGGuUCG- -5'
11910 5' -54.3 NC_003278.1 + 9590 0.69 0.434852
Target:  5'- ---cCGaCCUGGaccaacagcggcaGCAGCuGCGCCAGGCg -3'
miRNA:   3'- cauuGC-GGACCg------------CGUUG-UGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 10175 0.66 0.638108
Target:  5'- gGUAcCGcCCUGGUauccGCAGCAgCGCCAAc- -3'
miRNA:   3'- -CAUuGC-GGACCG----CGUUGU-GCGGUUcg -5'
11910 5' -54.3 NC_003278.1 + 10356 0.67 0.546525
Target:  5'- ---uCGCCaacGGCGagcuGCugGCCGAGUg -3'
miRNA:   3'- cauuGCGGa--CCGCgu--UGugCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 10701 0.7 0.3712
Target:  5'- --cGCGCCaaGgGCGACGC-CCAGGCg -3'
miRNA:   3'- cauUGCGGacCgCGUUGUGcGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 10798 0.67 0.585145
Target:  5'- ----aGCCUGGCGCucccgaagucagcuACGCGC--AGCg -3'
miRNA:   3'- cauugCGGACCGCGu-------------UGUGCGguUCG- -5'
11910 5' -54.3 NC_003278.1 + 12002 0.66 0.626567
Target:  5'- aGUAGCGCaggcGGCGCGGCuuGCUcuGGUc -3'
miRNA:   3'- -CAUUGCGga--CCGCGUUGugCGGu-UCG- -5'
11910 5' -54.3 NC_003278.1 + 12305 0.7 0.362125
Target:  5'- cGUAGCugaGCgUGGCGCugcCACGCUguAGGCg -3'
miRNA:   3'- -CAUUG---CGgACCGCGuu-GUGCGG--UUCG- -5'
11910 5' -54.3 NC_003278.1 + 12509 0.71 0.319924
Target:  5'- gGUAGCGgugcuggucgccauCCUGGCgggugagguugauguGCGGCAgCGCCAGGCc -3'
miRNA:   3'- -CAUUGC--------------GGACCG---------------CGUUGU-GCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 12714 0.69 0.442989
Target:  5'- -cAGCGCC-GGCGCgAGCACcggcuucagguuguuGCCGAGg -3'
miRNA:   3'- caUUGCGGaCCGCG-UUGUG---------------CGGUUCg -5'
11910 5' -54.3 NC_003278.1 + 12871 0.69 0.428806
Target:  5'- -aAAUGCuCUGGCGcCAGCGgGUCAacgaGGCg -3'
miRNA:   3'- caUUGCG-GACCGC-GUUGUgCGGU----UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.