miRNA display CGI


Results 1 - 20 of 130 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11910 5' -54.3 NC_003278.1 + 1265 0.85 0.035892
Target:  5'- -gAACGCUUGGCGUGuuGCGCCAGGCg -3'
miRNA:   3'- caUUGCGGACCGCGUugUGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 1761 0.72 0.272689
Target:  5'- -cAGCGCC-GuGCGCAGCGCGUCGAuGUc -3'
miRNA:   3'- caUUGCGGaC-CGCGUUGUGCGGUU-CG- -5'
11910 5' -54.3 NC_003278.1 + 2057 0.66 0.603514
Target:  5'- -cGGCGCCUGcaGCgGCAucCGCGuacCCAGGCg -3'
miRNA:   3'- caUUGCGGAC--CG-CGUu-GUGC---GGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 2546 0.68 0.513143
Target:  5'- cGUGccGCGCaCUGGC-CGACaccGCGCC-GGCg -3'
miRNA:   3'- -CAU--UGCG-GACCGcGUUG---UGCGGuUCG- -5'
11910 5' -54.3 NC_003278.1 + 3225 0.66 0.626567
Target:  5'- gGUGACGaUCUGGCGCcaGAUGCGguCCucGCa -3'
miRNA:   3'- -CAUUGC-GGACCGCG--UUGUGC--GGuuCG- -5'
11910 5' -54.3 NC_003278.1 + 3229 0.69 0.449148
Target:  5'- ----gGCCggcGGCGuCGAUAuCGCCGGGCa -3'
miRNA:   3'- cauugCGGa--CCGC-GUUGU-GCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 3943 0.75 0.175309
Target:  5'- --cGCGCCUGGCGCucaaGCuGCCGAuGCa -3'
miRNA:   3'- cauUGCGGACCGCGuug-UG-CGGUU-CG- -5'
11910 5' -54.3 NC_003278.1 + 4164 0.66 0.638108
Target:  5'- cUAGC-CUUGGCGCcGC-CGCCuugAGGCu -3'
miRNA:   3'- cAUUGcGGACCGCGuUGuGCGG---UUCG- -5'
11910 5' -54.3 NC_003278.1 + 4367 0.7 0.39934
Target:  5'- ---uCGCaccagagGGCGCuGgGCGCCAGGCg -3'
miRNA:   3'- cauuGCGga-----CCGCGuUgUGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 4529 0.66 0.638108
Target:  5'- aGUGG-GCCUGGC-CGGCuggugaguucgGCGCCuauGGCg -3'
miRNA:   3'- -CAUUgCGGACCGcGUUG-----------UGCGGu--UCG- -5'
11910 5' -54.3 NC_003278.1 + 4655 0.69 0.449148
Target:  5'- gGUGG-GCUUGGcCGUuguACAgGCCGAGCa -3'
miRNA:   3'- -CAUUgCGGACC-GCGu--UGUgCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 4702 0.69 0.418841
Target:  5'- ---cCGCuCUGGcCGCuguCGCGCUggGCg -3'
miRNA:   3'- cauuGCG-GACC-GCGuu-GUGCGGuuCG- -5'
11910 5' -54.3 NC_003278.1 + 5019 0.66 0.592023
Target:  5'- --cGCGaCCUGGgugaGCAACuCGgCGAGCa -3'
miRNA:   3'- cauUGC-GGACCg---CGUUGuGCgGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 5263 0.88 0.021215
Target:  5'- -cGACGCCuaccUGGCGCAGCuCGCCAAGCu -3'
miRNA:   3'- caUUGCGG----ACCGCGUUGuGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 5266 0.67 0.546525
Target:  5'- -cAGCGgcaccaCCaGGCGCAGCGCGUCGaccagGGCc -3'
miRNA:   3'- caUUGC------GGaCCGCGUUGUGCGGU-----UCG- -5'
11910 5' -54.3 NC_003278.1 + 5610 0.69 0.418841
Target:  5'- -aGGC-CCUGcuGCGCGACgcgauccucaaGCGCCAGGCc -3'
miRNA:   3'- caUUGcGGAC--CGCGUUG-----------UGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 5703 0.69 0.428806
Target:  5'- -cGGCGCCgccGGCGCGGCuguuguCGCUgcggucggccucGAGCa -3'
miRNA:   3'- caUUGCGGa--CCGCGUUGu-----GCGG------------UUCG- -5'
11910 5' -54.3 NC_003278.1 + 6261 0.68 0.47956
Target:  5'- --cGCGCCgcugccGGUgaagaucgcaccgGCGGcCACGCCGAGCa -3'
miRNA:   3'- cauUGCGGa-----CCG-------------CGUU-GUGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 6350 0.68 0.513143
Target:  5'- -gAACGCCuaUGaGCuGCAGCuCGCCcAGCu -3'
miRNA:   3'- caUUGCGG--AC-CG-CGUUGuGCGGuUCG- -5'
11910 5' -54.3 NC_003278.1 + 6524 0.67 0.535313
Target:  5'- cGUcAUGCuCUGGCGCAuCgAUGCC-GGCg -3'
miRNA:   3'- -CAuUGCG-GACCGCGUuG-UGCGGuUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.