miRNA display CGI


Results 1 - 20 of 130 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11910 5' -54.3 NC_003278.1 + 34356 0.71 0.344444
Target:  5'- --cGCGCaCUG-CaGCAGCAgGCCAAGCu -3'
miRNA:   3'- cauUGCG-GACcG-CGUUGUgCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 34251 1.12 0.000363
Target:  5'- uGUAACGCCUGGCGCAACACGCCAAGCg -3'
miRNA:   3'- -CAUUGCGGACCGCGUUGUGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 33470 0.78 0.116829
Target:  5'- -gGAUGCCgcugcaGGCGCcGCugGCCAAGUa -3'
miRNA:   3'- caUUGCGGa-----CCGCGuUGugCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 33161 0.71 0.335838
Target:  5'- -cGACgGCCUGaGCgacaGCGACugGCgCGAGCg -3'
miRNA:   3'- caUUG-CGGAC-CG----CGUUGugCG-GUUCG- -5'
11910 5' -54.3 NC_003278.1 + 32619 0.66 0.615033
Target:  5'- -gGGCGCCaucaucGGCGuCAAguCGCCcGGCc -3'
miRNA:   3'- caUUGCGGa-----CCGC-GUUguGCGGuUCG- -5'
11910 5' -54.3 NC_003278.1 + 32597 0.72 0.310972
Target:  5'- gGUGGCGCCUccGGCGguACcggGCGgCAAGUu -3'
miRNA:   3'- -CAUUGCGGA--CCGCguUG---UGCgGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 32382 0.67 0.569161
Target:  5'- -cAGCGaCUGGCGCAGCcugaACGaCCucGCc -3'
miRNA:   3'- caUUGCgGACCGCGUUG----UGC-GGuuCG- -5'
11910 5' -54.3 NC_003278.1 + 32182 0.79 0.103794
Target:  5'- -aAGCGCUuccugcuggUGGCGCGGCACGUCGAGa -3'
miRNA:   3'- caUUGCGG---------ACCGCGUUGUGCGGUUCg -5'
11910 5' -54.3 NC_003278.1 + 32161 0.68 0.481695
Target:  5'- -cGACGCCcaguucgaUGGCGCAugAgGCCuacacauucuggacuGGCg -3'
miRNA:   3'- caUUGCGG--------ACCGCGUugUgCGGu--------------UCG- -5'
11910 5' -54.3 NC_003278.1 + 31742 0.66 0.626567
Target:  5'- -gAGCGCCUGGC-CggUGuC-CCGGGCa -3'
miRNA:   3'- caUUGCGGACCGcGuuGU-GcGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 31625 0.69 0.43891
Target:  5'- ----gGCCUGG-GCGGCGgCGCCGcaGGCu -3'
miRNA:   3'- cauugCGGACCgCGUUGU-GCGGU--UCG- -5'
11910 5' -54.3 NC_003278.1 + 31591 0.73 0.251588
Target:  5'- -gAGCGCCaGGCGCGGauccaGCGCUAccagGGCg -3'
miRNA:   3'- caUUGCGGaCCGCGUUg----UGCGGU----UCG- -5'
11910 5' -54.3 NC_003278.1 + 31565 0.68 0.470012
Target:  5'- -aAACGCagggagGGCgGCGGCAUGCUuAAGCg -3'
miRNA:   3'- caUUGCGga----CCG-CGUUGUGCGG-UUCG- -5'
11910 5' -54.3 NC_003278.1 + 31150 0.72 0.295186
Target:  5'- ---cCGCCUGGCGCccaGCGCCcucuGGUg -3'
miRNA:   3'- cauuGCGGACCGCGuugUGCGGu---UCG- -5'
11910 5' -54.3 NC_003278.1 + 31032 0.68 0.470012
Target:  5'- -aAGCGCUgGGcCGCAGCgACGCUugcAGCa -3'
miRNA:   3'- caUUGCGGaCC-GCGUUG-UGCGGu--UCG- -5'
11910 5' -54.3 NC_003278.1 + 30802 0.7 0.368461
Target:  5'- -aAACGCCUGcugccgaucgcccaGCGCGACAgCGgCCAgAGCg -3'
miRNA:   3'- caUUGCGGAC--------------CGCGUUGU-GC-GGU-UCG- -5'
11910 5' -54.3 NC_003278.1 + 30661 0.68 0.513143
Target:  5'- ----aGCCUgaccGGCGCGGCaACGCCGGaacuGCa -3'
miRNA:   3'- cauugCGGA----CCGCGUUG-UGCGGUU----CG- -5'
11910 5' -54.3 NC_003278.1 + 30332 0.67 0.569161
Target:  5'- -gAGCGCCaGGaCGCcgucaACGCCGAcGCg -3'
miRNA:   3'- caUUGCGGaCC-GCGuug--UGCGGUU-CG- -5'
11910 5' -54.3 NC_003278.1 + 30261 0.74 0.231851
Target:  5'- --uGCGCCUGGUGguGC-CGCUguccGAGCa -3'
miRNA:   3'- cauUGCGGACCGCguUGuGCGG----UUCG- -5'
11910 5' -54.3 NC_003278.1 + 30254 0.7 0.39934
Target:  5'- ----aGCUUGGCG-AGCuGCGCCAGGUa -3'
miRNA:   3'- cauugCGGACCGCgUUG-UGCGGUUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.