miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11910 5' -54.3 NC_003278.1 + 34251 1.12 0.000363
Target:  5'- uGUAACGCCUGGCGCAACACGCCAAGCg -3'
miRNA:   3'- -CAUUGCGGACCGCGUUGUGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 5263 0.88 0.021215
Target:  5'- -cGACGCCuaccUGGCGCAGCuCGCCAAGCu -3'
miRNA:   3'- caUUGCGG----ACCGCGUUGuGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 1265 0.85 0.035892
Target:  5'- -gAACGCUUGGCGUGuuGCGCCAGGCg -3'
miRNA:   3'- caUUGCGGACCGCGUugUGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 13846 0.79 0.092137
Target:  5'- --uGCGCCggGGCGCug-GCGCCGAGCa -3'
miRNA:   3'- cauUGCGGa-CCGCGuugUGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 25917 0.79 0.094083
Target:  5'- -cAGCGCCUGGCGCAGCugcUGCCGcuguuggucaggucGGCc -3'
miRNA:   3'- caUUGCGGACCGCGUUGu--GCGGU--------------UCG- -5'
11910 5' -54.3 NC_003278.1 + 32182 0.79 0.103794
Target:  5'- -aAGCGCUuccugcuggUGGCGCGGCACGUCGAGa -3'
miRNA:   3'- caUUGCGG---------ACCGCGUUGUGCGGUUCg -5'
11910 5' -54.3 NC_003278.1 + 13444 0.78 0.113099
Target:  5'- -cAACGCgCUgccggccagcuccGGCaGCAGCACGCCGGGCa -3'
miRNA:   3'- caUUGCG-GA-------------CCG-CGUUGUGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 33470 0.78 0.116829
Target:  5'- -gGAUGCCgcugcaGGCGCcGCugGCCAAGUa -3'
miRNA:   3'- caUUGCGGa-----CCGCGuUGugCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 14221 0.77 0.12759
Target:  5'- gGUGACGCC-GGCG--GCGCGCCcGGCg -3'
miRNA:   3'- -CAUUGCGGaCCGCguUGUGCGGuUCG- -5'
11910 5' -54.3 NC_003278.1 + 28904 0.76 0.147581
Target:  5'- aUGACGCagccGGCGguACGCGCgAAGCg -3'
miRNA:   3'- cAUUGCGga--CCGCguUGUGCGgUUCG- -5'
11910 5' -54.3 NC_003278.1 + 3943 0.75 0.175309
Target:  5'- --cGCGCCUGGCGCucaaGCuGCCGAuGCa -3'
miRNA:   3'- cauUGCGGACCGCGuug-UG-CGGUU-CG- -5'
11910 5' -54.3 NC_003278.1 + 16627 0.75 0.190847
Target:  5'- -gAGCGCgaUUGGCGCGAC-CGCCA-GCu -3'
miRNA:   3'- caUUGCG--GACCGCGUUGuGCGGUuCG- -5'
11910 5' -54.3 NC_003278.1 + 23174 0.75 0.19629
Target:  5'- -gAGCGcCCUGcGCGCcgccCGCGCCGAGUg -3'
miRNA:   3'- caUUGC-GGAC-CGCGuu--GUGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 15884 0.74 0.21943
Target:  5'- --uGCGCCUGGCuGUugAugGCGCCAuuGGCc -3'
miRNA:   3'- cauUGCGGACCG-CG--UugUGCGGU--UCG- -5'
11910 5' -54.3 NC_003278.1 + 30261 0.74 0.231851
Target:  5'- --uGCGCCUGGUGguGC-CGCUguccGAGCa -3'
miRNA:   3'- cauUGCGGACCGCguUGuGCGG----UUCG- -5'
11910 5' -54.3 NC_003278.1 + 31591 0.73 0.251588
Target:  5'- -gAGCGCCaGGCGCGGauccaGCGCUAccagGGCg -3'
miRNA:   3'- caUUGCGGaCCGCGUUg----UGCGGU----UCG- -5'
11910 5' -54.3 NC_003278.1 + 29235 0.73 0.251588
Target:  5'- -aAGCGCCUgcucGGCGUGGC-CGCCGGuGCg -3'
miRNA:   3'- caUUGCGGA----CCGCGUUGuGCGGUU-CG- -5'
11910 5' -54.3 NC_003278.1 + 16288 0.72 0.271963
Target:  5'- -cGACGCaagGGCGCGGuggcucugucgauCGCGCUGAGCa -3'
miRNA:   3'- caUUGCGga-CCGCGUU-------------GUGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 15324 0.72 0.272689
Target:  5'- -cGACGCC-GGCggaguacuucaGCGAguCGCCGAGCa -3'
miRNA:   3'- caUUGCGGaCCG-----------CGUUguGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 9047 0.72 0.272689
Target:  5'- -cAGCGCCUGGCG-AACGCucGCCAGa- -3'
miRNA:   3'- caUUGCGGACCGCgUUGUG--CGGUUcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.