miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11910 5' -54.3 NC_003278.1 + 9010 0.7 0.380429
Target:  5'- ---uCGCCcgGGCggcuaugccgGCGGCAcCGCCGAGCa -3'
miRNA:   3'- cauuGCGGa-CCG----------CGUUGU-GCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 31150 0.72 0.295186
Target:  5'- ---cCGCCUGGCGCccaGCGCCcucuGGUg -3'
miRNA:   3'- cauuGCGGACCGCGuugUGCGGu---UCG- -5'
11910 5' -54.3 NC_003278.1 + 27845 0.71 0.335838
Target:  5'- --uACGCCgcaGGgGCuGCGCGgCAAGCg -3'
miRNA:   3'- cauUGCGGa--CCgCGuUGUGCgGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 33161 0.71 0.335838
Target:  5'- -cGACgGCCUGaGCgacaGCGACugGCgCGAGCg -3'
miRNA:   3'- caUUG-CGGAC-CG----CGUUGugCG-GUUCG- -5'
11910 5' -54.3 NC_003278.1 + 34356 0.71 0.344444
Target:  5'- --cGCGCaCUG-CaGCAGCAgGCCAAGCu -3'
miRNA:   3'- cauUGCG-GACcG-CGUUGUgCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 19649 0.71 0.352323
Target:  5'- -cAACaGCCaGGCGCAGCGCuuacgcaaccucaGCCAgcAGCa -3'
miRNA:   3'- caUUG-CGGaCCGCGUUGUG-------------CGGU--UCG- -5'
11910 5' -54.3 NC_003278.1 + 19308 0.71 0.353206
Target:  5'- -gAGCGCCUGaaGCAGCucaACGCUcAGCa -3'
miRNA:   3'- caUUGCGGACcgCGUUG---UGCGGuUCG- -5'
11910 5' -54.3 NC_003278.1 + 30802 0.7 0.368461
Target:  5'- -aAACGCCUGcugccgaucgcccaGCGCGACAgCGgCCAgAGCg -3'
miRNA:   3'- caUUGCGGAC--------------CGCGUUGU-GC-GGU-UCG- -5'
11910 5' -54.3 NC_003278.1 + 10701 0.7 0.3712
Target:  5'- --cGCGCCaaGgGCGACGC-CCAGGCg -3'
miRNA:   3'- cauUGCGGacCgCGUUGUGcGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 26112 0.72 0.28753
Target:  5'- ---cCGCUUGGCcacucCGACGCGCUggGCa -3'
miRNA:   3'- cauuGCGGACCGc----GUUGUGCGGuuCG- -5'
11910 5' -54.3 NC_003278.1 + 1761 0.72 0.272689
Target:  5'- -cAGCGCC-GuGCGCAGCGCGUCGAuGUc -3'
miRNA:   3'- caUUGCGGaC-CGCGUUGUGCGGUU-CG- -5'
11910 5' -54.3 NC_003278.1 + 9047 0.72 0.272689
Target:  5'- -cAGCGCCUGGCG-AACGCucGCCAGa- -3'
miRNA:   3'- caUUGCGGACCGCgUUGUG--CGGUUcg -5'
11910 5' -54.3 NC_003278.1 + 1265 0.85 0.035892
Target:  5'- -gAACGCUUGGCGUGuuGCGCCAGGCg -3'
miRNA:   3'- caUUGCGGACCGCGUugUGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 32182 0.79 0.103794
Target:  5'- -aAGCGCUuccugcuggUGGCGCGGCACGUCGAGa -3'
miRNA:   3'- caUUGCGG---------ACCGCGUUGUGCGGUUCg -5'
11910 5' -54.3 NC_003278.1 + 14221 0.77 0.12759
Target:  5'- gGUGACGCC-GGCG--GCGCGCCcGGCg -3'
miRNA:   3'- -CAUUGCGGaCCGCguUGUGCGGuUCG- -5'
11910 5' -54.3 NC_003278.1 + 3943 0.75 0.175309
Target:  5'- --cGCGCCUGGCGCucaaGCuGCCGAuGCa -3'
miRNA:   3'- cauUGCGGACCGCGuug-UG-CGGUU-CG- -5'
11910 5' -54.3 NC_003278.1 + 16627 0.75 0.190847
Target:  5'- -gAGCGCgaUUGGCGCGAC-CGCCA-GCu -3'
miRNA:   3'- caUUGCG--GACCGCGUUGuGCGGUuCG- -5'
11910 5' -54.3 NC_003278.1 + 23174 0.75 0.19629
Target:  5'- -gAGCGcCCUGcGCGCcgccCGCGCCGAGUg -3'
miRNA:   3'- caUUGC-GGAC-CGCGuu--GUGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 30261 0.74 0.231851
Target:  5'- --uGCGCCUGGUGguGC-CGCUguccGAGCa -3'
miRNA:   3'- cauUGCGGACCGCguUGuGCGG----UUCG- -5'
11910 5' -54.3 NC_003278.1 + 29235 0.73 0.251588
Target:  5'- -aAGCGCCUgcucGGCGUGGC-CGCCGGuGCg -3'
miRNA:   3'- caUUGCGGA----CCGCGUUGuGCGGUU-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.