miRNA display CGI


Results 1 - 20 of 130 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11910 5' -54.3 NC_003278.1 + 22124 0.66 0.638108
Target:  5'- -cGACGCUgaUGGaCGUAgGC-CGUCAAGCg -3'
miRNA:   3'- caUUGCGG--ACC-GCGU-UGuGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 15514 0.67 0.535313
Target:  5'- --cAUGCC-GG-GCAugGCGCCGAGg -3'
miRNA:   3'- cauUGCGGaCCgCGUugUGCGGUUCg -5'
11910 5' -54.3 NC_003278.1 + 30012 0.68 0.513143
Target:  5'- cGUAACGCUgguugucGaGCGCgGACACGUCGcGCg -3'
miRNA:   3'- -CAUUGCGGa------C-CGCG-UUGUGCGGUuCG- -5'
11910 5' -54.3 NC_003278.1 + 34251 1.12 0.000363
Target:  5'- uGUAACGCCUGGCGCAACACGCCAAGCg -3'
miRNA:   3'- -CAUUGCGGACCGCGUUGUGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 12002 0.66 0.626567
Target:  5'- aGUAGCGCaggcGGCGCGGCuuGCUcuGGUc -3'
miRNA:   3'- -CAUUGCGga--CCGCGUUGugCGGu-UCG- -5'
11910 5' -54.3 NC_003278.1 + 16172 0.66 0.615033
Target:  5'- -gGGCGCCgcgcugGGUGCGgaaggcgcGCACGUCGcucugcugAGCg -3'
miRNA:   3'- caUUGCGGa-----CCGCGU--------UGUGCGGU--------UCG- -5'
11910 5' -54.3 NC_003278.1 + 21904 0.66 0.592023
Target:  5'- --uGCGCCagGGCuuCGGCG-GCCAGGCg -3'
miRNA:   3'- cauUGCGGa-CCGc-GUUGUgCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 25274 0.67 0.580569
Target:  5'- -cGGCGCUUGaCGaCGACACGCUcGGUc -3'
miRNA:   3'- caUUGCGGACcGC-GUUGUGCGGuUCG- -5'
11910 5' -54.3 NC_003278.1 + 26009 0.67 0.55781
Target:  5'- ----gGCCUGGCGgGAaa-GCUggGCg -3'
miRNA:   3'- cauugCGGACCGCgUUgugCGGuuCG- -5'
11910 5' -54.3 NC_003278.1 + 21296 0.67 0.535313
Target:  5'- cGUcuCGCCgGGCGCG-C-CGCC-GGCg -3'
miRNA:   3'- -CAuuGCGGaCCGCGUuGuGCGGuUCG- -5'
11910 5' -54.3 NC_003278.1 + 5266 0.67 0.546525
Target:  5'- -cAGCGgcaccaCCaGGCGCAGCGCGUCGaccagGGCc -3'
miRNA:   3'- caUUGC------GGaCCGCGUUGUGCGGU-----UCG- -5'
11910 5' -54.3 NC_003278.1 + 22608 0.67 0.569161
Target:  5'- -cAGCGcCCUGG-GC-GCugGCCA-GCa -3'
miRNA:   3'- caUUGC-GGACCgCGuUGugCGGUuCG- -5'
11910 5' -54.3 NC_003278.1 + 12940 0.66 0.638108
Target:  5'- ----aGCCagaGGUGCAGCacgGCGCCGcGCg -3'
miRNA:   3'- cauugCGGa--CCGCGUUG---UGCGGUuCG- -5'
11910 5' -54.3 NC_003278.1 + 21497 0.67 0.535313
Target:  5'- -gGAUGUCcGGCGUGAUGCGCaggucCAGGCg -3'
miRNA:   3'- caUUGCGGaCCGCGUUGUGCG-----GUUCG- -5'
11910 5' -54.3 NC_003278.1 + 10175 0.66 0.638108
Target:  5'- gGUAcCGcCCUGGUauccGCAGCAgCGCCAAc- -3'
miRNA:   3'- -CAUuGC-GGACCG----CGUUGU-GCGGUUcg -5'
11910 5' -54.3 NC_003278.1 + 27747 0.67 0.580569
Target:  5'- gGUcACGCCggcGGUGCGACcguagugcCGCCAgcacAGCg -3'
miRNA:   3'- -CAuUGCGGa--CCGCGUUGu-------GCGGU----UCG- -5'
11910 5' -54.3 NC_003278.1 + 23282 0.67 0.535313
Target:  5'- cUGAUGCCcuUGGCGau-CACGUCGAcGCu -3'
miRNA:   3'- cAUUGCGG--ACCGCguuGUGCGGUU-CG- -5'
11910 5' -54.3 NC_003278.1 + 8412 0.67 0.524183
Target:  5'- gGUGGCGCCgcaGaGCGCGuuugugcauuGCGCGUacauCGAGCg -3'
miRNA:   3'- -CAUUGCGGa--C-CGCGU----------UGUGCG----GUUCG- -5'
11910 5' -54.3 NC_003278.1 + 4164 0.66 0.638108
Target:  5'- cUAGC-CUUGGCGCcGC-CGCCuugAGGCu -3'
miRNA:   3'- cAUUGcGGACCGCGuUGuGCGG---UUCG- -5'
11910 5' -54.3 NC_003278.1 + 23637 0.66 0.603514
Target:  5'- -cGGCGCC-GGCccGCGGCgAUGCCcaAGGCa -3'
miRNA:   3'- caUUGCGGaCCG--CGUUG-UGCGG--UUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.