miRNA display CGI


Results 21 - 40 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11910 5' -54.3 NC_003278.1 + 1761 0.72 0.272689
Target:  5'- -cAGCGCC-GuGCGCAGCGCGUCGAuGUc -3'
miRNA:   3'- caUUGCGGaC-CGCGUUGUGCGGUU-CG- -5'
11910 5' -54.3 NC_003278.1 + 28979 0.72 0.27929
Target:  5'- -gGGCGCC-GGCGUAAUcgccggcaucgauGCGCCAgAGCa -3'
miRNA:   3'- caUUGCGGaCCGCGUUG-------------UGCGGU-UCG- -5'
11910 5' -54.3 NC_003278.1 + 14302 0.72 0.280031
Target:  5'- -gGACGCCggcgaaGGCGCggUACaucagGCCGAGUg -3'
miRNA:   3'- caUUGCGGa-----CCGCGuuGUG-----CGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 26144 0.72 0.28753
Target:  5'- -cAACaCCUGGCGCAgaaggcucacgcGCugGCCucGGCg -3'
miRNA:   3'- caUUGcGGACCGCGU------------UGugCGGu-UCG- -5'
11910 5' -54.3 NC_003278.1 + 26112 0.72 0.28753
Target:  5'- ---cCGCUUGGCcacucCGACGCGCUggGCa -3'
miRNA:   3'- cauuGCGGACCGc----GUUGUGCGGuuCG- -5'
11910 5' -54.3 NC_003278.1 + 7006 0.72 0.28753
Target:  5'- -cGAUGCCgUGGUGCAGCAgCGCgauGGCg -3'
miRNA:   3'- caUUGCGG-ACCGCGUUGU-GCGgu-UCG- -5'
11910 5' -54.3 NC_003278.1 + 31150 0.72 0.295186
Target:  5'- ---cCGCCUGGCGCccaGCGCCcucuGGUg -3'
miRNA:   3'- cauuGCGGACCGCGuugUGCGGu---UCG- -5'
11910 5' -54.3 NC_003278.1 + 21761 0.72 0.310972
Target:  5'- -gAAUGaCCUGGCGCuucACACGCUccGGCc -3'
miRNA:   3'- caUUGC-GGACCGCGu--UGUGCGGu-UCG- -5'
11910 5' -54.3 NC_003278.1 + 32597 0.72 0.310972
Target:  5'- gGUGGCGCCUccGGCGguACcggGCGgCAAGUu -3'
miRNA:   3'- -CAUUGCGGA--CCGCguUG---UGCgGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 12509 0.71 0.319924
Target:  5'- gGUAGCGgugcuggucgccauCCUGGCgggugagguugauguGCGGCAgCGCCAGGCc -3'
miRNA:   3'- -CAUUGC--------------GGACCG---------------CGUUGU-GCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 27166 0.71 0.327391
Target:  5'- gGUAGCaGaCCaGGCGCAGCGCGgCA-GCg -3'
miRNA:   3'- -CAUUG-C-GGaCCGCGUUGUGCgGUuCG- -5'
11910 5' -54.3 NC_003278.1 + 29897 0.71 0.327391
Target:  5'- -gAGgGCCUGGCGCuugaggauCGCGUCGcGCa -3'
miRNA:   3'- caUUgCGGACCGCGuu------GUGCGGUuCG- -5'
11910 5' -54.3 NC_003278.1 + 24713 0.71 0.335838
Target:  5'- -aGACGCUgcGCGUAGCugacuucgggaGCGCCAGGCu -3'
miRNA:   3'- caUUGCGGacCGCGUUG-----------UGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 27845 0.71 0.335838
Target:  5'- --uACGCCgcaGGgGCuGCGCGgCAAGCg -3'
miRNA:   3'- cauUGCGGa--CCgCGuUGUGCgGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 33161 0.71 0.335838
Target:  5'- -cGACgGCCUGaGCgacaGCGACugGCgCGAGCg -3'
miRNA:   3'- caUUG-CGGAC-CG----CGUUGugCG-GUUCG- -5'
11910 5' -54.3 NC_003278.1 + 34356 0.71 0.344444
Target:  5'- --cGCGCaCUG-CaGCAGCAgGCCAAGCu -3'
miRNA:   3'- cauUGCG-GACcG-CGUUGUgCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 29042 0.71 0.344444
Target:  5'- -gGGCGCCcuugccGGCcuGCAGCACGCCGgaaauguacGGCu -3'
miRNA:   3'- caUUGCGGa-----CCG--CGUUGUGCGGU---------UCG- -5'
11910 5' -54.3 NC_003278.1 + 19649 0.71 0.352323
Target:  5'- -cAACaGCCaGGCGCAGCGCuuacgcaaccucaGCCAgcAGCa -3'
miRNA:   3'- caUUG-CGGaCCGCGUUGUG-------------CGGU--UCG- -5'
11910 5' -54.3 NC_003278.1 + 19308 0.71 0.353206
Target:  5'- -gAGCGCCUGaaGCAGCucaACGCUcAGCa -3'
miRNA:   3'- caUUGCGGACcgCGUUG---UGCGGuUCG- -5'
11910 5' -54.3 NC_003278.1 + 12305 0.7 0.362125
Target:  5'- cGUAGCugaGCgUGGCGCugcCACGCUguAGGCg -3'
miRNA:   3'- -CAUUG---CGgACCGCGuu-GUGCGG--UUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.