Results 21 - 40 of 130 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11910 | 5' | -54.3 | NC_003278.1 | + | 20332 | 0.66 | 0.603514 |
Target: 5'- ---cCGCCUGG-GCAcguccaagGCGguaGCCAAGCu -3' miRNA: 3'- cauuGCGGACCgCGU--------UGUg--CGGUUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 23637 | 0.66 | 0.603514 |
Target: 5'- -cGGCGCC-GGCccGCGGCgAUGCCcaAGGCa -3' miRNA: 3'- caUUGCGGaCCG--CGUUG-UGCGG--UUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 5019 | 0.66 | 0.592023 |
Target: 5'- --cGCGaCCUGGgugaGCAACuCGgCGAGCa -3' miRNA: 3'- cauUGC-GGACCg---CGUUGuGCgGUUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 21904 | 0.66 | 0.592023 |
Target: 5'- --uGCGCCagGGCuuCGGCG-GCCAGGCg -3' miRNA: 3'- cauUGCGGa-CCGc-GUUGUgCGGUUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 10798 | 0.67 | 0.585145 |
Target: 5'- ----aGCCUGGCGCucccgaagucagcuACGCGC--AGCg -3' miRNA: 3'- cauugCGGACCGCGu-------------UGUGCGguUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 27747 | 0.67 | 0.580569 |
Target: 5'- gGUcACGCCggcGGUGCGACcguagugcCGCCAgcacAGCg -3' miRNA: 3'- -CAuUGCGGa--CCGCGUUGu-------GCGGU----UCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 25274 | 0.67 | 0.580569 |
Target: 5'- -cGGCGCUUGaCGaCGACACGCUcGGUc -3' miRNA: 3'- caUUGCGGACcGC-GUUGUGCGGuUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 17183 | 0.67 | 0.579425 |
Target: 5'- -cAACGCCgccacugUGGUGguGCGggugaaGCCGGGCg -3' miRNA: 3'- caUUGCGG-------ACCGCguUGUg-----CGGUUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 8363 | 0.67 | 0.577141 |
Target: 5'- --uGCGCCUGGUcugcuaccagcgcuGCGGCGCccgcuuccGCCGcAGCg -3' miRNA: 3'- cauUGCGGACCG--------------CGUUGUG--------CGGU-UCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 30332 | 0.67 | 0.569161 |
Target: 5'- -gAGCGCCaGGaCGCcgucaACGCCGAcGCg -3' miRNA: 3'- caUUGCGGaCC-GCGuug--UGCGGUU-CG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 29829 | 0.67 | 0.569161 |
Target: 5'- --cGCGCCggcGGCGC----CGCCAAGUc -3' miRNA: 3'- cauUGCGGa--CCGCGuuguGCGGUUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 13615 | 0.67 | 0.569161 |
Target: 5'- -gAGCGCCUGGCcGCcgaAGCccugGCGCagauuGAGCg -3' miRNA: 3'- caUUGCGGACCG-CG---UUG----UGCGg----UUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 22608 | 0.67 | 0.569161 |
Target: 5'- -cAGCGcCCUGG-GC-GCugGCCA-GCa -3' miRNA: 3'- caUUGC-GGACCgCGuUGugCGGUuCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 32382 | 0.67 | 0.569161 |
Target: 5'- -cAGCGaCUGGCGCAGCcugaACGaCCucGCc -3' miRNA: 3'- caUUGCgGACCGCGUUG----UGC-GGuuCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 26009 | 0.67 | 0.55781 |
Target: 5'- ----gGCCUGGCGgGAaa-GCUggGCg -3' miRNA: 3'- cauugCGGACCGCgUUgugCGGuuCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 9362 | 0.67 | 0.556679 |
Target: 5'- --uGCGCCgaGGC-CAGCgcgugagccuucuGCGCCAGGUg -3' miRNA: 3'- cauUGCGGa-CCGcGUUG-------------UGCGGUUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 10356 | 0.67 | 0.546525 |
Target: 5'- ---uCGCCaacGGCGagcuGCugGCCGAGUg -3' miRNA: 3'- cauuGCGGa--CCGCgu--UGugCGGUUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 26464 | 0.67 | 0.546525 |
Target: 5'- gGUAucguCGaUCUGGCG-AGCGuuCGCCAGGCg -3' miRNA: 3'- -CAUu---GC-GGACCGCgUUGU--GCGGUUCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 5266 | 0.67 | 0.546525 |
Target: 5'- -cAGCGgcaccaCCaGGCGCAGCGCGUCGaccagGGCc -3' miRNA: 3'- caUUGC------GGaCCGCGUUGUGCGGU-----UCG- -5' |
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11910 | 5' | -54.3 | NC_003278.1 | + | 21474 | 0.67 | 0.535313 |
Target: 5'- -cGGCGCCggccaGGC-CGGCcCGCUggGCg -3' miRNA: 3'- caUUGCGGa----CCGcGUUGuGCGGuuCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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